Experiment description: Juicer version 1.6; BWA 0.7.17-r1188; 10 threads; openjdk version "11.0.18" 2023-01-17; /storage2/dreamworld/Tools/juicer1.6_compact/scripts/juicer.sh -g hg19 -d /storage/nyt/Projects/Juicer-Out/2023-04-11_Hic_Sci/HiC-Sc-5 -s DpnII -y /storage/nyt/Data/Genomes/Sciara/juicer.rs/sciara_merged_Prim_on_Gerbi_soft_WG.rawchrom.assembly_DpnII.txt -p /storage/nyt/Data/Genomes/Sciara/sciara_merged_Prim_on_Gerbi_soft_WG.rawchrom.assembly.chromsizes -z /storage/nyt/Data/Genomes/Sciara/sciara_merged_Prim_on_Gerbi_soft_WG.rawchrom.assembly.fasta -D /storage2/dreamworld/Tools/juicer1.6_compact -t 10                                                                                                                                                                                                                                                                                                                                                                                                
Sequenced Read Pairs:  17,532
 Normal Paired: 4,539 (25.89%)
 Chimeric Paired: 6,625 (37.79%)
 Chimeric Ambiguous: 3,657 (20.86%)
 Unmapped: 2,711 (15.46%)
 Ligation Motif Present: 12,686 (72.36%)
Alignable (Normal+Chimeric Paired): 11,164 (63.68%)
WARNING: sun.reflect.Reflection.getCallerClass is not supported. This will impact performance.
WARN [2023-04-11T19:19:14,762]  [Globals.java:138] [main]  Development mode is enabled
Unique Reads: 11,153 (63.62%)
PCR Duplicates: 2 (0.01%)
Optical Duplicates: 9 (0.05%)
Library Complexity Estimate: 31,104,787
Intra-fragment Reads: 538 (3.07% / 4.82%)
Below MAPQ Threshold: 2,216 (12.64% / 19.87%)
Hi-C Contacts: 8,399 (47.91% / 75.31%)
 Ligation Motif Present: 6,590  (37.59% / 59.09%)
 3' Bias (Long Range): 60% - 40%
 Pair Type intra chrom %(L-I-O-R): 17% - 48% - 17% - 18%
 Pair Type inter chrom %(L-I-O-R): 24% - 26% - 27% - 24%
 DE: 25%
 Cis/all (FF and RR orient): 78.3%
Inter-chromosomal: 1,435  (8.19% / 12.87%)
Intra-chromosomal: 6,964  (39.72% / 62.44%)
Short Range (<20,000bp): 3,226  (18.40% / 28.92%)
Long Range (>20,000bp): 3,738  (21.32% / 33.52%)