Experiment description: Juicer version 1.5.6;6 threads; java version "1.8.0_45"; /mnt/storage/home/manuriddinov/Distributive/juicer-master/CPU/juicer.sh -t 6 -d /mnt/storage/home/manuriddinov/scratch/fastq/Mlig3/MB -p /mnt/storage/home/manuriddinov/MyData/Worms/genome/Mlig3/Mlig3.chr.sizes -y /mnt/storage/home/manuriddinov/MyData/Worms/genome/Mlig3/Mlig3.MboI.juicer.txt -z /mnt/storage/home/manuriddinov/MyData/Worms/genome/Mlig3/Mlig3.fa -o /mnt/storage/home/manuriddinov/scratch/Invertebrates/Mlig3/MB -D /mnt/storage/home/manuriddinov/Distributive/juicer-master/CPU                                                                                                                                                                                                                                                                                                                                                                                                                                             
Sequenced Read Pairs:  5,513,521
 Normal Paired: 3,313,118 (60.09%)
 Chimeric Paired: 704,646 (12.78%)
 Chimeric Ambiguous: 968,666 (17.57%)
 Unmapped: 527,091 (9.56%)
 Ligation Motif Present: 2,687,466 (48.74%)
Alignable (Normal+Chimeric Paired): 4,017,764 (72.87%)
Unique Reads: 3,936,519 (71.40%)
PCR Duplicates: 76,267 (1.38%)
Optical Duplicates: 4,978 (0.09%)
Library Complexity Estimate: 104,224,433
Intra-fragment Reads: 107,349 (1.95% / 2.73%)
Below MAPQ Threshold: 3,066,353 (55.62% / 77.90%)
Hi-C Contacts: 762,817 (13.84% / 19.38%)
 Ligation Motif Present: 332,865  (6.04% / 8.46%)
 3' Bias (Long Range): 83% - 17%
 Pair Type %(L-I-O-R): 25% - 25% - 25% - 25%
Inter-chromosomal: 443,520  (8.04% / 11.27%)
Intra-chromosomal: 319,297  (5.79% / 8.11%)
Short Range (<20Kb): 268,453  (4.87% / 6.82%)
Long Range (>20Kb): 50,843  (0.92% / 1.29%)