Experiment description: Juicer version 1.5.6;6 threads; java version "1.8.0_45"; /mnt/storage/home/manuriddinov/Distributive/juicer-master/CPU/juicer.sh -t 6 -d /mnt/storage/home/manuriddinov/scratch/fastq/Mlig3/MC -p /mnt/storage/home/manuriddinov/MyData/Worms/genome/Mlig3/Mlig3.chr.sizes -y /mnt/storage/home/manuriddinov/MyData/Worms/genome/Mlig3/Mlig3.MboI.juicer.txt -z /mnt/storage/home/manuriddinov/MyData/Worms/genome/Mlig3/Mlig3.fa -o /mnt/storage/home/manuriddinov/scratch/Invertebrates/Mlig3/MC -D /mnt/storage/home/manuriddinov/Distributive/juicer-master/CPU                                                                                                                                                                                                                                                                                                                                                                                                                                             
Sequenced Read Pairs:  4,789,301
 Normal Paired: 3,154,465 (65.86%)
 Chimeric Paired: 449,144 (9.38%)
 Chimeric Ambiguous: 605,714 (12.65%)
 Unmapped: 579,978 (12.11%)
 Ligation Motif Present: 1,577,612 (32.94%)
Alignable (Normal+Chimeric Paired): 3,603,609 (75.24%)
Unique Reads: 3,537,671 (73.87%)
PCR Duplicates: 61,978 (1.29%)
Optical Duplicates: 3,960 (0.08%)
Library Complexity Estimate: 103,329,483
Intra-fragment Reads: 263,837 (5.51% / 7.46%)
Below MAPQ Threshold: 2,642,799 (55.18% / 74.70%)
Hi-C Contacts: 631,035 (13.18% / 17.84%)
 Ligation Motif Present: 187,054  (3.91% / 5.29%)
 3' Bias (Long Range): 67% - 33%
 Pair Type %(L-I-O-R): 25% - 25% - 25% - 25%
Inter-chromosomal: 328,905  (6.87% / 9.30%)
Intra-chromosomal: 302,130  (6.31% / 8.54%)
Short Range (<20Kb): 273,291  (5.71% / 7.73%)
Long Range (>20Kb): 28,838  (0.60% / 0.82%)