Experiment description: Juicer version 1.5.6;6 threads; java version "1.8.0_45"; /mnt/storage/home/manuriddinov/Distributive/juicer-master/CPU/juicer.sh -t 6 -d /mnt/storage/home/manuriddinov/scratch/fastq/O/O13 -b GATC -p /mnt/storage/home/manuriddinov/MyData/Vertebrates/genome/galGal5/galGal5.chr.sizes -y /mnt/storage/home/manuriddinov/MyData/Vertebrates/genome/galGal5/galGal5.MboI.juicer.txt -z /mnt/storage/home/manuriddinov/MyData/Vertebrates/genome/galGal5/galGal5.fa -o /mnt/storage/home/manuriddinov/scratch/Vertebrates/O/O13 -D /mnt/storage/home/manuriddinov/Distributive/juicer-master/CPU                                                                                                                                                                                                                                                                                                                                                                                                               
Sequenced Read Pairs:  6,134,812
 Normal Paired: 5,033,418 (82.05%)
 Chimeric Paired: 519,200 (8.46%)
 Chimeric Ambiguous: 125,827 (2.05%)
 Unmapped: 456,367 (7.44%)
 Ligation Motif Present: 8,594,234 (140.09%)
Alignable (Normal+Chimeric Paired): 5,552,618 (90.51%)
Unique Reads: 4,606,392 (75.09%)
PCR Duplicates: 946,226 (15.42%)
Optical Duplicates: 0 (0.00%)
Library Complexity Estimate: 14,383,021
Intra-fragment Reads: 2,597,781 (42.34% / 56.40%)
Below MAPQ Threshold: 50,876 (0.83% / 1.10%)
Hi-C Contacts: 1,957,735 (31.91% / 42.50%)
 Ligation Motif Present: 1,716,558  (27.98% / 37.26%)
 3' Bias (Long Range): 72% - 28%
 Pair Type %(L-I-O-R): 25% - 26% - 25% - 24%
Inter-chromosomal: 47,102  (0.77% / 1.02%)
Intra-chromosomal: 1,910,633  (31.14% / 41.48%)
Short Range (<20Kb): 1,676,766  (27.33% / 36.40%)
Long Range (>20Kb): 233,866  (3.81% / 5.08%)