Experiment description: Juicer version 1.5.6;6 threads; java version "1.8.0_45"; /mnt/storage/home/manuriddinov/Distributive/juicer-master/CPU/juicer.sh -t 6 -d /mnt/storage/home/manuriddinov/scratch/fastq/O/O13 -b GATC -p /mnt/storage/home/manuriddinov/MyData/Vertebrates/genome/galGal5/galGal5.chr.sizes -y /mnt/storage/home/manuriddinov/MyData/Vertebrates/genome/galGal5/galGal5.MboI.juicer.txt -z /mnt/storage/home/manuriddinov/MyData/Vertebrates/genome/galGal5/galGal5.fa -o /mnt/storage/home/manuriddinov/scratch/Vertebrates/O/O13 -D /mnt/storage/home/manuriddinov/Distributive/juicer-master/CPU                                                                                                                                                                                                                                                                                                                                                                                                               
Sequenced Read Pairs:  6,134,812
 Normal Paired: 5,033,418 (82.05%)
 Chimeric Paired: 519,200 (8.46%)
 Chimeric Ambiguous: 125,827 (2.05%)
 Unmapped: 456,367 (7.44%)
 Ligation Motif Present: 8,594,234 (140.09%)
Alignable (Normal+Chimeric Paired): 5,552,618 (90.51%)
Unique Reads: 4,606,392 (75.09%)
PCR Duplicates: 946,226 (15.42%)
Optical Duplicates: 0 (0.00%)
Library Complexity Estimate: 14,383,021
Intra-fragment Reads: 2,597,781 (42.34% / 56.40%)
Below MAPQ Threshold: 70,262 (1.15% / 1.53%)
Hi-C Contacts: 1,938,349 (31.60% / 42.08%)
 Ligation Motif Present: 1,702,148  (27.75% / 36.95%)
 3' Bias (Long Range): 73% - 27%
 Pair Type %(L-I-O-R): 26% - 26% - 25% - 24%
Inter-chromosomal: 43,532  (0.71% / 0.95%)
Intra-chromosomal: 1,894,817  (30.89% / 41.13%)
Short Range (<20Kb): 1,666,231  (27.16% / 36.17%)
Long Range (>20Kb): 228,585  (3.73% / 4.96%)