Experiment description: Juicer version 1.5.6;6 threads; java version "1.8.0_45"; /mnt/storage/home/manuriddinov/Distributive/juicer-master/CPU/juicer.sh -t 6 -d /mnt/storage/home/manuriddinov/scratch/fastq/O/O14 -b GATC -p /mnt/storage/home/manuriddinov/MyData/Vertebrates/genome/galGal5/galGal5.chr.sizes -y /mnt/storage/home/manuriddinov/MyData/Vertebrates/genome/galGal5/galGal5.MboI.juicer.txt -z /mnt/storage/home/manuriddinov/MyData/Vertebrates/genome/galGal5/galGal5.fa -o /mnt/storage/home/manuriddinov/scratch/Vertebrates/O/O14 -D /mnt/storage/home/manuriddinov/Distributive/juicer-master/CPU                                                                                                                                                                                                                                                                                                                                                                                                               
Sequenced Read Pairs:  5,569,507
 Normal Paired: 4,762,507 (85.51%)
 Chimeric Paired: 500,603 (8.99%)
 Chimeric Ambiguous: 78,824 (1.42%)
 Unmapped: 227,573 (4.09%)
 Ligation Motif Present: 2,412,758 (43.32%)
Alignable (Normal+Chimeric Paired): 5,263,110 (94.50%)
Unique Reads: 4,877,834 (87.58%)
PCR Duplicates: 385,276 (6.92%)
Optical Duplicates: 0 (0.00%)
Library Complexity Estimate: 34,172,026
Intra-fragment Reads: 2,608,301 (46.83% / 53.47%)
Below MAPQ Threshold: 71,111 (1.28% / 1.46%)
Hi-C Contacts: 2,198,422 (39.47% / 45.07%)
 Ligation Motif Present: 1,918,237  (34.44% / 39.33%)
 3' Bias (Long Range): 72% - 28%
 Pair Type %(L-I-O-R): 25% - 25% - 26% - 24%
Inter-chromosomal: 13,784  (0.25% / 0.28%)
Intra-chromosomal: 2,184,638  (39.22% / 44.79%)
Short Range (<20Kb): 2,019,293  (36.26% / 41.40%)
Long Range (>20Kb): 165,343  (2.97% / 3.39%)