Experiment description: Juicer version 1.5.6;6 threads; java version "1.8.0_45"; /mnt/storage/home/manuriddinov/Distributive/juicer-master/CPU/juicer.sh -t 6 -d /mnt/storage/home/manuriddinov/scratch/fastq/O/O19 -b GATC -p /mnt/storage/home/manuriddinov/MyData/Vertebrates/genome/galGal5/galGal5.chr.sizes -y /mnt/storage/home/manuriddinov/MyData/Vertebrates/genome/galGal5/galGal5.MboI.juicer.txt -z /mnt/storage/home/manuriddinov/MyData/Vertebrates/genome/galGal5/galGal5.fa -o /mnt/storage/home/manuriddinov/scratch/Vertebrates/O/O19 -D /mnt/storage/home/manuriddinov/Distributive/juicer-master/CPU                                                                                                                                                                                                                                                                                                                                                                                                               
Sequenced Read Pairs:  14,250,730
 Normal Paired: 11,275,573 (79.12%)
 Chimeric Paired: 307,728 (2.16%)
 Chimeric Ambiguous: 64,390 (0.45%)
 Unmapped: 2,603,039 (18.27%)
 Ligation Motif Present: 6,387,931 (44.83%)
Alignable (Normal+Chimeric Paired): 11,583,301 (81.28%)
Unique Reads: 10,371,960 (72.78%)
PCR Duplicates: 1,211,341 (8.50%)
Optical Duplicates: 0 (0.00%)
Library Complexity Estimate: 51,449,519
Intra-fragment Reads: 5,491,743 (38.54% / 52.95%)
Below MAPQ Threshold: 90,396 (0.63% / 0.87%)
Hi-C Contacts: 4,789,821 (33.61% / 46.18%)
 Ligation Motif Present: 4,232,740  (29.70% / 40.81%)
 3' Bias (Long Range): 71% - 29%
 Pair Type %(L-I-O-R): 26% - 19% - 33% - 22%
Inter-chromosomal: 23,109  (0.16% / 0.22%)
Intra-chromosomal: 4,766,712  (33.45% / 45.96%)
Short Range (<20Kb): 4,741,264  (33.27% / 45.71%)
Long Range (>20Kb): 25,448  (0.18% / 0.25%)