Experiment description: Juicer version 1.5.6;6 threads; java version "1.8.0_45"; /mnt/storage/home/manuriddinov/Distributive/juicer-master/CPU/juicer.sh -t 6 -d /mnt/storage/home/manuriddinov/scratch/fastq/NOVA/o -p /mnt/storage/home/manuriddinov/MyData/Vertebrates/genome/mm10/mm10.chr.sizes -y /mnt/storage/home/manuriddinov/MyData/Vertebrates/genome/mm10/mm10.MboI.juicer.txt -z /mnt/storage/home/manuriddinov/MyData/Vertebrates/genome/mm10/mm10.fa -o /mnt/storage/home/manuriddinov/scratch/Vertebrates_out/NOVA/o -D /mnt/storage/home/manuriddinov/Distributive/juicer-master/CPU                                                                                                                                                                                                                                                                                                                                                                                                                                   
Sequenced Read Pairs:  270,413,633
 Normal Paired: 116,981,592 (43.26%)
 Chimeric Paired: 96,314,836 (35.62%)
 Chimeric Ambiguous: 55,904,778 (20.67%)
 Unmapped: 1,212,427 (0.45%)
 Ligation Motif Present: 167,863,210 (62.08%)
Alignable (Normal+Chimeric Paired): 213,296,428 (78.88%)
Unique Reads: 174,551,061 (64.55%)
PCR Duplicates: 36,897,498 (13.64%)
Optical Duplicates: 1,847,869 (0.68%)
Library Complexity Estimate: 533,125,329
Intra-fragment Reads: 20,065,578 (7.42% / 11.50%)
Below MAPQ Threshold: 26,169,729 (9.68% / 14.99%)
Hi-C Contacts: 128,315,754 (47.45% / 73.51%)
 Ligation Motif Present: 63,757,346  (23.58% / 36.53%)
 3' Bias (Long Range): 69% - 31%
 Pair Type %(L-I-O-R): 25% - 25% - 25% - 25%
Inter-chromosomal: 76,050,636  (28.12% / 43.57%)
Intra-chromosomal: 52,265,118  (19.33% / 29.94%)
Short Range (<20Kb): 35,954,450  (13.30% / 20.60%)
Long Range (>20Kb): 16,310,611  (6.03% / 9.34%)