Experiment description: Juicer version 1.6; BWA 0.7.17-r1188; 20 threads; openjdk version "1.8.0_152-release"; /home/aapopov/tool/juicer1.6_compact-main/scripts/juicer.sh -g GRCm39 -d /data/aapopov/Projects/ChickenOocyt/NSN_mouse_oocytes/SRR3344105_pass -s DpnII -y /data/aapopov/Projects/ChickenOocyt/Mouse_genome/GRCm39_DpnII.txt -p /data/aapopov/Projects/ChickenOocyt/Mouse_genome/GRCm39.fasta.chrom.sizes -D /home/aapopov/tool/juicer1.6_compact-main -z /data/aapopov/Projects/ChickenOocyt/Mouse_genome/GRCm39.fasta -t 20                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            
Sequenced Read Pairs:  24,701,752
 Normal Paired: 5,666,479 (22.94%)
 Chimeric Paired: 815,014 (3.30%)
 Chimeric Ambiguous: 316,446 (1.28%)
 Unmapped: 17,903,813 (72.48%)
 Ligation Motif Present: 3,937 (0.02%)
Alignable (Normal+Chimeric Paired): 6,481,493 (26.24%)
WARN [2024-01-15T07:31:49,632]  [Globals.java:138] [main]  Development mode is enabled
Unique Reads: 2,194,190 (8.88%)
PCR Duplicates: 4,287,303 (17.36%)
Optical Duplicates: 0 (0.00%)
Library Complexity Estimate: 2,341,097
Intra-fragment Reads: 1,003,403 (4.06% / 45.73%)
Below MAPQ Threshold: 432,345 (1.75% / 19.70%)
Hi-C Contacts: 758,442 (3.07% / 34.57%)
 Ligation Motif Present: 134  (0.00% / 0.01%)
 3' Bias (Long Range): 68% - 32%
 Pair Type intra chrom %(L-I-O-R): 13% - 54% - 20% - 13%
 Pair Type inter chrom %(L-I-O-R): 28% - 20% - 22% - 29%
 DE: 47%
 Cis/all (FF and RR orient): 94.1%
Inter-chromosomal: 20,727  (0.08% / 0.94%)
Intra-chromosomal: 737,715  (2.99% / 33.62%)
Short Range (<20,000bp): 605,873  (2.45% / 27.61%)
Long Range (>20,000bp): 131,842  (0.53% / 6.01%)