Experiment description: Juicer version 1.6; BWA 0.7.17-r1188; 20 threads; openjdk version "1.8.0_152-release"; /home/aapopov/tool/juicer1.6_compact-main/scripts/juicer.sh -g GRCm39 -d /data/aapopov/Projects/ChickenOocyt/NSN_mouse_oocytes/SRR3344105_pass -s DpnII -y /data/aapopov/Projects/ChickenOocyt/Mouse_genome/GRCm39_DpnII.txt -p /data/aapopov/Projects/ChickenOocyt/Mouse_genome/GRCm39.fasta.chrom.sizes -D /home/aapopov/tool/juicer1.6_compact-main -z /data/aapopov/Projects/ChickenOocyt/Mouse_genome/GRCm39.fasta -t 20                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            
Sequenced Read Pairs:  24,701,752
 Normal Paired: 5,666,479 (22.94%)
 Chimeric Paired: 815,014 (3.30%)
 Chimeric Ambiguous: 316,446 (1.28%)
 Unmapped: 17,903,813 (72.48%)
 Ligation Motif Present: 3,937 (0.02%)
Alignable (Normal+Chimeric Paired): 6,481,493 (26.24%)
WARN [2024-01-15T07:31:49,632]  [Globals.java:138] [main]  Development mode is enabled
Unique Reads: 2,194,190 (8.88%)
PCR Duplicates: 4,287,303 (17.36%)
Optical Duplicates: 0 (0.00%)
Library Complexity Estimate: 2,341,097
Intra-fragment Reads: 1,003,403 (4.06% / 45.73%)
Below MAPQ Threshold: 379,777 (1.54% / 17.31%)
Hi-C Contacts: 811,010 (3.28% / 36.96%)
 Ligation Motif Present: 141  (0.00% / 0.01%)
 3' Bias (Long Range): 68% - 32%
 Pair Type intra chrom %(L-I-O-R): 13% - 53% - 20% - 14%
 Pair Type inter chrom %(L-I-O-R): 28% - 21% - 22% - 29%
 DE: 46%
 Cis/all (FF and RR orient): 93.4%
Inter-chromosomal: 25,574  (0.10% / 1.17%)
Intra-chromosomal: 785,436  (3.18% / 35.80%)
Short Range (<20,000bp): 646,393  (2.62% / 29.46%)
Long Range (>20,000bp): 139,043  (0.56% / 6.34%)