Experiment description: Juicer version 1.6; BWA 0.7.17-r1188; 20 threads; openjdk version "1.8.0_152-release"; /home/aapopov/tool/juicer1.6_compact-main/scripts/juicer.sh -g GRCm39 -d /data/aapopov/Projects/ChickenOocyt/NSN_mouse_oocytes/SRR3344155_pass -s DpnII -y /data/aapopov/Projects/ChickenOocyt/Mouse_genome/GRCm39_DpnII.txt -p /data/aapopov/Projects/ChickenOocyt/Mouse_genome/GRCm39.fasta.chrom.sizes -D /home/aapopov/tool/juicer1.6_compact-main -z /data/aapopov/Projects/ChickenOocyt/Mouse_genome/GRCm39.fasta -t 20                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            
Sequenced Read Pairs:  17,228,397
 Normal Paired: 13,231 (0.08%)
 Chimeric Paired: 2,111 (0.01%)
 Chimeric Ambiguous: 707 (0.00%)
 Unmapped: 17,212,348 (99.91%)
 Ligation Motif Present: 9,610 (0.06%)
Alignable (Normal+Chimeric Paired): 15,342 (0.09%)
WARN [2024-01-15T08:25:40,792]  [Globals.java:138] [main]  Development mode is enabled
Unique Reads: 14,582 (0.08%)
PCR Duplicates: 760 (0.00%)
Optical Duplicates: 0 (0.00%)
Library Complexity Estimate: 149,695
Intra-fragment Reads: 7,947 (0.05% / 54.50%)
Below MAPQ Threshold: 1,708 (0.01% / 11.71%)
Hi-C Contacts: 4,927 (0.03% / 33.79%)
 Ligation Motif Present: 0  (0.00% / 0.00%)
 3' Bias (Long Range): 69% - 31%
 Pair Type intra chrom %(L-I-O-R): 8% - 63% - 21% - 8%
 Pair Type inter chrom %(L-I-O-R): 20% - 35% - 30% - 15%
 DE: 65%
 Cis/all (FF and RR orient): 93.8%
Inter-chromosomal: 150  (0.00% / 1.03%)
Intra-chromosomal: 4,777  (0.03% / 32.76%)
Short Range (<20,000bp): 4,370  (0.03% / 29.97%)
Long Range (>20,000bp): 407  (0.00% / 2.79%)