Experiment description: Juicer version 1.6; BWA 0.7.17-r1188; 4 threads; openjdk version "11.0.15" 2022-04-19; /Data/Tools/juicer1.6_compact/scripts/juicer.sh -t 4 -D /Data/Tools/juicer1.6_compact -g ParusMajor1_1 -z /Data/DataBases/Parus_major_1.1/Parus_major1.1/Parus_major1.1.fasta -p /Data/DataBases/Parus_major_1.1/Parus_major1.1/Parus_major1.1.chromsizes.txt -s DpnII -y /Data/DataBases/Parus_major_1.1/Parus_major1.1/Parus_major1.1.rsites.DpnII.txt -d /Data/NGS_Data/20220513_titmouse                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             
Sequenced Read Pairs:  66,503,087
 Normal Paired: 29,041,308 (43.67%)
 Chimeric Paired: 29,552,991 (44.44%)
 Chimeric Ambiguous: 3,683,667 (5.54%)
 Unmapped: 4,225,121 (6.35%)
 Ligation Motif Present: 53,204,868 (80.00%)
Alignable (Normal+Chimeric Paired): 58,594,299 (88.11%)
WARNING: sun.reflect.Reflection.getCallerClass is not supported. This will impact performance.
WARN [2022-06-10T23:03:07,491]  [Globals.java:138] [main]  Development mode is enabled
Unique Reads: 55,316,168 (83.18%)
PCR Duplicates: 3,278,131 (4.93%)
Optical Duplicates: 0 (0.00%)
Library Complexity Estimate: 503,946,860
Intra-fragment Reads: 2,552,077 (3.84% / 4.61%)
Below MAPQ Threshold: 1,520,051 (2.29% / 2.75%)
Hi-C Contacts: 51,244,040 (77.06% / 92.64%)
 Ligation Motif Present: 41,345,132  (62.17% / 74.74%)
 3' Bias (Long Range): 76% - 24%
 Pair Type %(L-I-O-R): 25% - 25% - 25% - 25%
Inter-chromosomal: 8,306,175  (12.49% / 15.02%)
Intra-chromosomal: 42,937,865  (64.57% / 77.62%)
Short Range (<20Kb): 20,345,586  (30.59% / 36.78%)
Long Range (>20Kb): 22,592,229  (33.97% / 40.84%)