Experiment description: Juicer version 1.5.6;23 threads; java version "1.8.0_45"; /mnt/storage/home/manuriddinov/Distributive/juicer-master/CPU/juicer.sh -t 23 -d /mnt/scratch/ws/sykozyreva/202208051313data/Parus_Major/tit -p /mnt/scratch/ws/sykozyreva/202208051313data/Parus_major1.1_HiC/Parus_major1.1_HiC.chrom.sizes -q 30 -n Parus_major1.1_HiC -y /mnt/scratch/ws/sykozyreva/202208051313data/Parus_major1.1_HiC/Parus_major1.1_HiC.DpnII.juicer.txt -z /mnt/scratch/ws/sykozyreva/202208051313data/Parus_major1.1_HiC/Parus_major1.1_HiC.fasta -o /mnt/scratch/ws/sykozyreva/202208051313data/Parus_Major/PM_processed7 -D /mnt/storage/home/manuriddinov/Distributive/juicer-master/CPU                                                                                                                                                                                                                                                                                                                                  
Sequenced Read Pairs:  66,503,087
 Normal Paired: 29,091,595 (43.74%)
 Chimeric Paired: 29,465,288 (44.31%)
 Chimeric Ambiguous: 3,933,111 (5.91%)
 Unmapped: 4,013,093 (6.03%)
 Ligation Motif Present: 53,202,727 (80.00%)
Alignable (Normal+Chimeric Paired): 58,556,883 (88.05%)
Unique Reads: 55,295,865 (83.15%)
PCR Duplicates: 3,261,018 (4.90%)
Optical Duplicates: 0 (0.00%)
Library Complexity Estimate: 506,036,327
Intra-fragment Reads: 1,108,375 (1.67% / 2.00%)
Below MAPQ Threshold: 1,564,557 (2.35% / 2.83%)
Hi-C Contacts: 52,622,933 (79.13% / 95.17%)
 Ligation Motif Present: 31,588,966  (47.50% / 57.13%)
 3' Bias (Long Range): 80% - 20%
 Pair Type intra chrom %(L-I-O-R): 18% - 46% - 18% - 18%
 Pair Type inter chrom %(L-I-O-R): 25% - 25% - 24% - 25%
 DE: 27%
 Cis/all (FF and RR orient): 98.8%
Inter-chromosomal: 439,530  (0.66% / 0.79%)
Intra-chromosomal: 52,183,403  (78.47% / 94.37%)
Short Range (<1bp): 0  (0.00% / 0.00%)
Long Range (>1bp): 52,183,403  (78.47% / 94.37%)