Experiment description: Juicer version 1.5.6; BWA 0.7.13-r1126; 23 threads; java version "1.8.0_45"; /mnt/storage/home/manuriddinov/Distributive/juicer-master/CPU/juicer.sh -t 23 -d /mnt/storage/home/sykozyreva/Parus_Major/fastq_hic_inv -p /mnt/scratch/ws/sykozyreva/202303161046data2/Parus_major_with_kmers_inv/Parus_major_with_kmers.chrom.sizes -q 30 -n PM_with_kmers_inv -y /mnt/scratch/ws/sykozyreva/202303161046data2/Parus_major_with_kmers_inv/Parus_major_with_kmers.DpnII.juicer.txt -z /mnt/scratch/ws/sykozyreva/202303161046data2/Parus_major_with_kmers_inv/fasta/Parus_major_with_kmers.fasta -o /mnt/scratch/ws/sykozyreva/202303161046data2/Parus_major_with_kmers_inv/PM_processed_2 -D /mnt/storage/home/manuriddinov/Distributive/juicer-master/CPU                                                                                                                                                                                                                                                       
Sequenced Read Pairs:  66,503,087
 Normal Paired: 29,698,944 (44.66%)
 Chimeric Paired: 29,832,491 (44.86%)
 Chimeric Ambiguous: 3,971,636 (5.97%)
 Unmapped: 3,000,016 (4.51%)
 Ligation Motif Present: 53,202,727 (80.00%)
Alignable (Normal+Chimeric Paired): 59,531,435 (89.52%)
Unique Reads: 55,562,326 (83.55%)
PCR Duplicates: 3,969,109 (5.97%)
Optical Duplicates: 0 (0.00%)
Library Complexity Estimate: 426,374,240
Intra-fragment Reads: 1,109,437 (1.67% / 2.00%)
Below MAPQ Threshold: 1,581,709 (2.38% / 2.85%)
Hi-C Contacts: 52,871,180 (79.50% / 95.16%)
 Ligation Motif Present: 31,668,065  (47.62% / 57.00%)
 3' Bias (Long Range): 80% - 20%
 Pair Type intra chrom %(L-I-O-R): 18% - 46% - 18% - 18%
 Pair Type inter chrom %(L-I-O-R): 25% - 25% - 25% - 25%
 DE: 27%
 Cis/all (FF and RR orient): 98.0%
Inter-chromosomal: 785,518  (1.18% / 1.41%)
Intra-chromosomal: 52,085,662  (78.32% / 93.74%)
Short Range (<1bp): 0  (0.00% / 0.00%)
Long Range (>1bp): 52,085,662  (78.32% / 93.74%)