Experiment description: Juicer version 1.6; BWA 0.7.17-r1188; 4 threads; java version "1.8.0_371"; /mnt/storage/home/arnurislamov/Software/juicer_compact/scripts/juicer.sh -g rheMac10 -d /mnt/storage/home/arnurislamov/arnurislamov/202311031502new/MAK1/ -s DpnII -p /mnt/storage/home/arnurislamov/Genomes/rheMac10/rheMac10.chromsizes -y /mnt/storage/home/arnurislamov/Genomes/rheMac10/rheMac10_DpnII.txt -z /mnt/storage/home/arnurislamov/Genomes/rheMac10/Macaca_mulatta.Mmul_10.dna.toplevel.fa -D /mnt/storage/home/arnurislamov/Software/juicer_compact/ -t 4 -S merge                                                                                                                                                                                                                                                                                                                                                                                                                                                   
Sequenced Read Pairs:  142,828
 Normal Paired: 84,690 (59.30%)
 Chimeric Paired: 35,293 (24.71%)
 Chimeric Ambiguous: 21,180 (14.83%)
 Unmapped: 1,665 (1.17%)
 Ligation Motif Present: 95,174 (66.64%)
Alignable (Normal+Chimeric Paired): 119,983 (84.01%)
Intra-fragment Reads: 6,541 (4.58% / 6.01%)
Below MAPQ Threshold: 30,822 (21.58% / 28.33%)
Hi-C Contacts: 71,435 (50.01% / 65.66%)
 Ligation Motif Present: 49,404  (34.59% / 45.41%)
 3' Bias (Long Range): 72% - 28%
 Pair Type intra chrom %(L-I-O-R): 12% - 64% - 12% - 12%
 Pair Type inter chrom %(L-I-O-R): 25% - 25% - 25% - 25%
 DE: 39%
 Cis/all (FF and RR orient): 60.2%
Inter-chromosomal: 17,238  (12.07% / 15.84%)
Intra-chromosomal: 54,197  (37.95% / 49.81%)
Short Range (<20,000bp): 31,798  (22.26% / 29.23%)
Long Range (>20,000bp): 22,399  (15.68% / 20.59%)