NanoPlot statistics report

NanoPlot reports

Summary statistics

General summary
Active channels 507.0
Mean read length 7,912.3
Mean read quality 9.4
Median read length 1,391.0
Median read quality 11.7
Number of reads 925,344.0
Read length N50 37,462.0
STDEV read length 16,162.5
Total bases 7,321,571,167.0
Number, percentage and megabases of reads above quality cutoffs
>Q5 885810 (95.7%) 7204.8Mb
>Q7 791852 (85.6%) 6697.5Mb
>Q10 625213 (67.6%) 5489.7Mb
>Q12 428942 (46.4%) 3851.5Mb
>Q15 81188 (8.8%) 634.7Mb
Top 5 highest mean basecall quality scores and their read lengths
1 22.6 (636)
2 21.4 (246)
3 21.3 (440)
4 21.2 (807)
5 21.0 (504)
Top 5 longest reads and their mean basecall quality score
1 352800 (12.1)
2 250811 (13.4)
3 245743 (14.4)
4 229391 (11.9)
5 221774 (11.3)

Plots

Weighted histogram of read lengths

Weighted histogram of read lengths after log transformation

Non weighted histogram of read lengths

Non weighted histogram of read lengths after log transformation

Yield by length

Read lengths vs Average read quality plot using dots

Read lengths vs Average read quality kde plot

Number of reads generated per channel

Cumulative yield

Cumulative yield

Number of reads over time

Number of active pores over time

Violin plot of read lengths over time

Violin plot of quality over time

Violin plot of sequencing speed over time