NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Active channels |
497.0 |
| Mean read length |
5,962.8 |
| Mean read quality |
8.3 |
| Median read length |
1,130.0 |
| Median read quality |
10.6 |
| Number of reads |
46,323.0 |
| Read length N50 |
33,385.0 |
| STDEV read length |
13,297.5 |
| Total bases |
276,215,171.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
42626 (92.0%) 264.3Mb |
| >Q7 |
36031 (77.8%) 227.1Mb |
| >Q10 |
26206 (56.6%) 171.6Mb |
| >Q12 |
14793 (31.9%) 100.1Mb |
| >Q15 |
961 (2.1%) 2.5Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
18.5 (210) |
| 2 |
18.3 (664) |
| 3 |
18.2 (437) |
| 4 |
18.2 (617) |
| 5 |
18.2 (256) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
150971 (12.2) |
| 2 |
129232 (12.6) |
| 3 |
123368 (8.1) |
| 4 |
121529 (13.7) |
| 5 |
121237 (12.9) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot
Number of reads generated per channel
Number of reads over time
Number of active pores over time
Violin plot of read lengths over time
Violin plot of quality over time
Violin plot of sequencing speed over time