##FastQC	0.12.1
>>Basic Statistics	pass
#Measure	Value
Filename	LT3GC_L01_R1.fq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1707912
Total Bases	256.1 Mbp
Sequences flagged as poor quality	0
Sequence length	150
%GC	46
>>END_MODULE
>>Per base sequence quality	pass
#Base	Mean	Median	Lower Quartile	Upper Quartile	10th Percentile	90th Percentile
1	35.41889687524884	36.0	36.0	36.0	36.0	36.0
2	35.09398610701254	36.0	36.0	36.0	36.0	36.0
3	35.15621530851707	36.0	36.0	36.0	36.0	36.0
4	33.35457213252205	36.0	36.0	36.0	14.0	36.0
5	33.85450245680105	36.0	36.0	36.0	36.0	36.0
6	35.464960138461464	36.0	36.0	36.0	36.0	36.0
7	35.02991957431062	36.0	36.0	36.0	36.0	36.0
8	35.116141815269174	36.0	36.0	36.0	36.0	36.0
9	34.97206530547241	36.0	36.0	36.0	36.0	36.0
10-14	35.08468796987198	36.0	36.0	36.0	35.0	36.0
15-19	35.13150665842268	36.0	36.0	36.0	34.0	36.0
20-24	34.4206147623531	36.0	36.0	36.0	30.6	36.0
25-29	34.556587458838635	36.0	36.0	36.0	32.0	36.0
30-34	34.2704810318096	36.0	36.0	36.0	31.0	36.0
35-39	34.18857517249132	36.0	36.0	36.0	31.0	36.0
40-44	34.17848156111088	36.0	36.0	36.0	31.0	36.0
45-49	34.24380600405641	36.0	36.0	36.0	31.0	36.0
50-54	34.1587587650886	36.0	36.0	36.0	29.8	36.0
55-59	34.05080929228204	36.0	36.0	36.0	27.4	36.0
60-64	34.147327379865004	36.0	36.0	36.0	29.8	36.0
65-69	34.05974816032676	36.0	36.0	36.0	27.4	36.0
70-74	33.995128788836894	36.0	36.0	36.0	27.4	36.0
75-79	33.947183929851185	36.0	36.0	36.0	26.2	36.0
80-84	33.86940228770569	36.0	36.0	36.0	25.0	36.0
85-89	33.89189302493337	36.0	36.0	36.0	25.0	36.0
90-94	33.83098660820932	36.0	36.0	36.0	25.0	36.0
95-99	33.75426825269686	36.0	36.0	36.0	25.0	36.0
100-104	33.82319955594902	36.0	36.0	36.0	25.0	36.0
105-109	33.80328295603052	36.0	36.0	36.0	25.0	36.0
110-114	33.65205818566765	36.0	36.0	36.0	25.0	36.0
115-119	33.701871056588395	36.0	36.0	36.0	25.0	36.0
120-124	33.699379593328	36.0	36.0	36.0	25.0	36.0
125-129	33.61414288323989	36.0	36.0	36.0	25.0	36.0
130-134	33.53835502063338	36.0	36.0	36.0	25.0	36.0
135-139	33.58362655687178	36.0	36.0	36.0	25.0	36.0
140-144	33.40914040067638	36.0	36.0	36.0	25.0	36.0
145-149	33.32451250415713	36.0	36.0	36.0	25.0	36.0
150	33.330268187119714	36.0	36.0	36.0	25.0	36.0
>>END_MODULE
>>Per sequence quality scores	pass
#Quality	Count
18	18.0
19	71.0
20	184.0
21	315.0
22	632.0
23	1355.0
24	3263.0
25	7978.0
26	16848.0
27	28652.0
28	40634.0
29	52656.0
30	66464.0
31	84441.0
32	109741.0
33	153494.0
34	247538.0
35	770271.0
36	123357.0
>>END_MODULE
>>Per base sequence content	fail
#Base	G	A	T	C
1	0.060249005803577706	99.82463967698571	0.1073240307463148	0.0077872864644080025
2	0.363367667655008	0.03893643232204001	99.56320934568058	0.034486554342378295
3	99.637861903892	0.036711493332209154	0.2698616790560638	0.05556492371972326
4	99.22870733386732	0.09450135604176327	0.5053539058218456	0.17143740426907242
5	0.42226999985947755	0.729018825325895	98.7367616130105	0.11194956180412105
6	0.1415178299584522	98.87816234091686	0.9385143965262848	0.04180543259840085
7	1.0854774719072178	0.07921953824318817	98.72030877469096	0.11499421515862643
8	98.80058223140303	0.03618453409777553	0.09309613141660694	1.0701371030825944
9	1.272314696883189	0.06400515320538158	0.08737025487870935	98.57630989503272
10-14	19.762778156153786	39.936510145514276	20.346133219750243	19.95457847858169
15-19	0.10344994434439857	39.87589990028738	40.075008824877756	19.94564133049047
20-24	20.0824784400992	19.880371579479938	20.18397125862109	39.85317872179977
25-29	16.79468174424096	23.539168678175997	38.67000970771895	20.99613986986409
30-34	23.439181884518845	27.29079479530129	26.036119924991247	23.23390339518862
35-39	24.706032272236573	25.866067957713856	24.49703540449573	24.93086436555384
40-44	24.01160012368468	26.64247631719498	25.254982524854064	24.09094103426628
45-49	24.395883993048635	25.39206842490283	25.770908032135193	24.441139549913345
50-54	24.387894619844054	26.493876779453736	24.68486747837999	24.433361122322225
55-59	24.159938948091355	26.085121314433724	25.616691269511477	24.138248467963443
60-64	23.97269242436132	26.987593534536774	25.497517652832123	23.542196388269783
65-69	23.88093263811786	26.21837214640751	25.899880070645885	24.00081514482875
70-74	23.759851670238234	25.494242219708834	26.619376072889683	24.126530037163253
75-79	24.075947768926536	25.863565873677967	24.946836538327528	25.11364981906797
80-84	23.684741874378247	25.937152816898607	25.851609477321297	24.526495831401853
85-89	24.044849914690715	26.193381292672207	25.496079801891327	24.265688990745744
90-94	24.34518387882946	26.45329352531349	25.12135593998487	24.080166655872183
95-99	23.974863344587135	26.75700862229396	25.395519817596806	23.872608215522096
100-104	24.151722134772506	26.530397365264974	24.86287572146016	24.455004778502364
105-109	24.315966623570635	25.923025439934445	25.665515122537897	24.095492813957023
110-114	23.88758812376256	26.872237923939036	24.822253168836035	24.417920783462375
115-119	24.334466076450145	26.62801026063556	24.92144574271359	24.116077920200706
120-124	24.331939252350132	26.44949770330966	25.268630483813066	23.949932560527145
125-129	24.41506989246115	25.885270735263234	25.030439334917954	24.669220037357658
130-134	24.6393039647897	26.864040777120007	24.635520757334884	23.861134500755412
135-139	24.16090511764243	27.02369528793064	24.79036098626974	24.025038608157192
140-144	24.264266740955588	26.27798691712154	24.78180168279397	24.675944659128906
145-149	24.013188732415493	27.451249453926387	23.840226360402962	24.69533545325516
150	23.5662591841831	26.58374767427819	23.767440715343373	26.08255242619534
>>END_MODULE
>>Per sequence GC content	pass
#GC Content	Count
0	0.0
1	0.0
2	0.0
3	0.0
4	0.0
5	0.0
6	0.0
7	0.0
8	0.0
9	0.0
10	0.0
11	0.0
12	0.0
13	0.0
14	0.0
15	0.0
16	0.0
17	0.0
18	0.0
19	0.0
20	0.5
21	1.5
22	12.5
23	475.0
24	814.5
25	974.5
26	1037.5
27	1041.5
28	2448.0
29	4492.0
30	8220.0
31	12520.0
32	15815.0
33	21383.0
34	24336.0
35	22649.5
36	23326.0
37	26999.5
38	33547.0
39	42356.0
40	53724.0
41	64819.5
42	76583.5
43	79702.0
44	84772.5
45	103570.5
46	107673.0
47	107323.0
48	106385.5
49	99033.0
50	93684.5
51	84669.5
52	73684.0
53	64183.5
54	53560.0
55	46864.5
56	44708.5
57	35640.0
58	23663.0
59	16299.5
60	12942.5
61	11089.5
62	7163.0
63	4420.0
64	3866.5
65	2528.5
66	1833.0
67	880.5
68	142.5
69	35.0
70	10.5
71	3.5
72	2.0
73	1.0
74	0.0
75	0.0
76	0.0
77	0.0
78	0.0
79	0.0
80	0.0
81	0.0
82	0.0
83	0.0
84	0.0
85	0.5
86	0.5
87	0.0
88	0.0
89	0.0
90	0.0
91	0.0
92	0.0
93	0.0
94	0.0
95	0.0
96	0.0
97	0.0
98	0.0
99	0.0
100	0.0
>>END_MODULE
>>Per base N content	pass
#Base	N-Count
1	0.0
2	0.0
3	0.0
4	0.0
5	0.0
6	0.0
7	0.0
8	0.0
9	0.013876593173418772
10-14	0.036044011635259894
15-19	0.04720383720004309
20-24	0.05815287907105284
25-29	0.023701455344303454
30-34	0.022132287846212215
35-39	0.01912276510733574
40-44	0.020141552960574082
45-49	0.01618350359971708
50-54	0.016464548524748348
55-59	0.014661176922464388
60-64	0.014871960616237839
65-69	0.014052246251563313
70-74	0.01507103410480165
75-79	0.014883670821447476
80-84	0.014028825841144042
85-89	0.01423960953491749
90-94	0.01460262589641621
95-99	0.013033458398324971
100-104	0.015457470876719642
105-109	0.02386539821723836
110-114	0.026664137262341386
115-119	0.028889076252172245
120-124	0.02664071685192211
125-129	0.024439198272510527
130-134	0.021441385738843688
135-139	0.029322353844928775
140-144	0.041196501927499775
145-149	0.0692307331993686
150	0.11651654183587913
>>END_MODULE
>>Sequence Length Distribution	pass
#Length	Count
150	1707912.0
>>END_MODULE
>>Sequence Duplication Levels	fail
#Total Deduplicated Percentage	9.09367199098822
#Duplication Level	Percentage of total
1	7.3935173011793625
2	1.8366670521443564
3	0.7885522178826517
4	0.3815931334070609
5	0.20945718293042473
6	0.13134429733994737
7	0.07742695581783487
8	0.06863814703552708
9	0.050220093093298016
>10	1.8111832279260078
>50	3.4766309708065526
>100	41.61546648650957
>500	29.437276206149278
>1k	12.722026727778132
>5k	0.0
>10k+	0.0
>>END_MODULE
>>Overrepresented sequences	warn
#Sequence	Count	Percentage	Possible Source
ATGGTATGCGCAATTACATTCAGCTTAATGGAGTTTATGTTGAGCTTCTC	2758	0.16148372984088172	No Hit
ATGGTATGCGCAATTACATTCAGCTAGGCATGCTTAGAGCCAGCAGGTTT	2437	0.1426888504794158	No Hit
ATGGTATGCGCAATTACATTCAGCTCAATGAATTTAGCCTGAAAGTGTCT	2371	0.1388244827602359	No Hit
ATGGTATGCGCAATTACATTCAGCAGATCGGAAGAGCACACGTCTGAACT	2239	0.13109574732187607	Illumina Multiplexing PCR Primer 2.01 (100% over 26bp)
ATGGTATGCGCAATTACATTCAGCTCTTCGCCAGGCGCTTGCCAAAAGGT	2180	0.12764123678503342	No Hit
ATGGTATGCGCAATTACATTCAGCTTCTTGATCTTATCTTCCGCCTTCTT	2161	0.126528767290118	No Hit
ATGGTATGCGCAATTACATTCAGCTAGTACACATCGATTGCGAAGGGTTT	2097	0.12278150162303444	No Hit
ATGGTATGCGCAATTACATTCAGCTACTACGACGACCCCATTCACCGTCG	2010	0.11768756235684273	No Hit
ATGGTATGCGCAATTACATTCAGCTGGACCATTCCTGGCCGTTCTCGGCA	1827	0.10697272459002571	No Hit
ATGGTATGCGCAATTACATTCAGCTAGGGACAGCGACGACTTAGGCACGC	1784	0.10445503046995394	No Hit
ATGGTATGCGCAATTACATTCAGCTTATTTCCATACTCATGATTGGTAAG	1773	0.10381096918342397	No Hit
ATGGTATGCGCAATTACATTCAGCTCAATTATTATGTGCGCGTACGATAA	1763	0.10322545892294216	No Hit
ATGGTATGCGCAATTACATTCAGCTCTGGGGCCTTTTGGAATGATGGCGT	1749	0.10240574455826763	No Hit
ATGGTATGCGCAATTACATTCAGCTCCGTATTGAGCAGAGCGCGCAGCGT	1740	0.10187878532383401	No Hit
>>END_MODULE
>>Adapter Content	fail
#Position	Illumina Universal Adapter	Illumina Small RNA 3' Adapter	Illumina Small RNA 5' Adapter	Nextera Transposase Sequence	PolyA	PolyG
1	0.0	0.0	0.0	0.0	0.0	0.0
2	0.0	0.0	0.0	0.0	0.0	0.0
3	0.0	0.0	0.0	0.0	0.0	0.0
4	0.0	0.0	0.0	0.0	0.0	0.0
5	0.0	0.0	0.0	0.0	0.0	0.0
6	0.0	0.0	0.0	0.0	0.0	0.0
7	0.0	0.0	0.0	0.0	0.0	0.0
8	0.0	0.0	0.0	0.0	0.0	0.0
9	0.0	0.0	0.0	0.0	0.0	0.0
10-11	0.0	0.0	0.0	0.0	0.0	0.0
12-13	0.0	0.0	0.0	0.0	0.0	0.0
14-15	0.0	0.0	0.0	0.0	0.0	0.0
16-17	0.0	0.0	0.0	0.0	0.0	0.0
18-19	0.0	0.0	0.0	0.0	0.0	0.0
20-21	2.3420410419272187E-4	0.0	0.0	0.0	0.0	0.0
22-23	0.011680929696612004	0.0	0.0	0.0	0.0	0.0
24-25	0.0953503459194619	0.0	0.0	0.0	0.0	0.0
26-27	0.18443573205176847	0.0	0.0	0.0	0.0	5.855102604818047E-5
28-29	0.18449428307781665	0.0	0.0	0.0	0.0	5.855102604818047E-5
30-31	0.19330621249806781	0.0	0.0	0.0	1.1710205209636093E-4	5.855102604818047E-5
32-33	0.1960288352093082	0.0	0.0	0.0	1.1710205209636093E-4	5.855102604818047E-5
34-35	0.1960288352093082	0.0	0.0	0.0	0.006645541456468482	5.855102604818047E-5
36-37	0.1960288352093082	0.0	0.0	0.0	0.012647021626406981	5.855102604818047E-5
38-39	0.1960288352093082	0.0	0.0	0.0	0.01267629713943107	5.855102604818047E-5
40-41	0.1960288352093082	0.0	0.0	0.0	0.0176824098665505	1.1710205209636093E-4
42-43	0.1960288352093082	0.0	0.0	0.0	0.022366491950404938	1.756530781445414E-4
44-45	0.1960288352093082	0.0	0.0	0.0	0.022366491950404938	1.756530781445414E-4
46-47	0.1960288352093082	0.0	0.0	0.0	0.022542145028549482	1.756530781445414E-4
48-49	0.19608738623535638	0.0	0.0	0.0	0.02262997156762175	1.756530781445414E-4
50-51	0.19608738623535638	0.0	0.0	0.0	0.02274707361971811	3.8058166931317303E-4
52-53	0.19614593726140456	0.0	0.0	0.0	0.028397247633367526	5.855102604818047E-4
54-55	0.19655579444374183	0.0	0.0	0.0	0.028982757893849333	5.855102604818047E-4
56-57	0.20785614247104067	0.0	0.0	0.0	0.0308856662404152	5.855102604818047E-4
58-59	0.26216221913072807	0.0	0.0	0.0	0.06042465888172224	5.855102604818047E-4
60-61	0.31316016281869324	0.0	0.0	0.0	0.060453934394746334	5.855102604818047E-4
62-63	0.34618294150986706	0.0	0.0	0.0	0.060483209907770424	5.855102604818047E-4
64-65	0.3605279428916712	0.0	0.0	0.0	0.060541760933818606	5.855102604818047E-4
66-67	0.4124041519703591	0.0	0.0	0.0	0.060541760933818606	5.855102604818047E-4
68-69	0.568120605745495	0.0	0.0	0.0	0.060541760933818606	6.440612865299852E-4
70-71	0.6483062359184782	0.0	0.0	0.0	0.060775965038011324	6.440612865299852E-4
72-73	0.7128880176496213	0.0	0.0	0.0	0.060775965038011324	6.440612865299852E-4
74-75	0.764383645058996	0.0	0.0	0.0	0.060775965038011324	6.440612865299852E-4
76-77	0.8602316746998675	0.0	0.0	0.0	0.060775965038011324	6.440612865299852E-4
78-79	0.9334497327731172	0.0	0.0	0.0	0.060775965038011324	6.440612865299852E-4
80-81	1.0424717432748292	0.0	0.0	0.0	0.060775965038011324	6.440612865299852E-4
82-83	1.1921281658539784	0.0	0.0	0.0	0.060805240551035415	6.733367995540754E-4
84-85	1.411050452248125	0.0	0.0	0.0	0.06101016914220405	0.003922918745228091
86-87	1.4955688583486737	0.0	0.0	0.0	0.07479893577655054	0.003922918745228091
88-89	1.6606827518045426	0.0	0.0	0.0	0.07919026273016408	0.003922918745228091
90-91	1.8881242124886997	0.0	0.0	0.0	0.11663364388797548	0.003922918745228091
92-93	2.1641044737667983	0.0	0.0	0.0	0.15422340261090736	0.003922918745228091
94-95	2.472844034118854	0.0	0.0	0.0	0.15439905568905188	0.003922918745228091
96-97	2.5973820665233336	0.0	0.0	0.0	0.15840980097335228	0.003922918745228091
98-99	2.773708481467429	0.0	0.0	2.9275513024090234E-5	0.1595515459812918	0.003922918745228091
100-101	3.1743146016890798	0.0	0.0	5.855102604818047E-5	0.1595515459812918	0.003922918745228091
102-103	3.547899423389495	0.0	0.0	5.855102604818047E-5	0.15966864803338815	0.003922918745228091
104-105	3.784328466572048	0.0	0.0	5.855102604818047E-5	0.15966864803338815	0.003981469771276272
106-107	4.101528650188065	0.0	0.0	5.855102604818047E-5	0.15966864803338815	0.003981469771276272
108-109	4.309209139580962	0.0	0.0	5.855102604818047E-5	0.15972719905943633	0.004215673875468994
110-111	4.57652384900393	0.0	0.0	5.855102604818047E-5	0.15984430111153267	0.004215673875468994
112-113	4.989454960208723	0.0	0.0	5.855102604818047E-5	0.16028343380689403	0.004215673875468994
114-115	5.582840333694008	0.0	0.0	5.855102604818047E-5	0.1872754568151052	0.004215673875468994
116-117	6.0187819981357356	0.0	0.0	5.855102604818047E-5	0.19280852877665827	0.004215673875468994
118-119	6.490439788466853	0.0	0.0	5.855102604818047E-5	0.19286707980270645	0.004215673875468994
120-121	6.83261198469242	0.0	0.0	5.855102604818047E-5	0.19313055941992327	0.004215673875468994
122-123	7.481650108436501	0.0	0.0	5.855102604818047E-5	0.20999325492179927	0.004332775927565355
124-125	8.15200080566212	0.0	0.0	5.855102604818047E-5	0.24828562595730927	0.004508429005709896
126-127	8.660779946507784	0.0	0.0	5.855102604818047E-5	0.27328691407988237	0.00620640876110713
128-129	9.066772761125865	0.0	0.0	5.855102604818047E-5	0.2898275789384933	0.006294235300179401
130-131	9.657669716004104	0.0	0.0	5.855102604818047E-5	0.2979661715591904	0.0063527863262275806
132-133	10.391050592770586	0.0	0.0	5.855102604818047E-5	0.3264219702186061	0.006382061839251671
134-135	11.074750923935191	0.0	0.0	5.855102604818047E-5	0.4179372239319122	0.006440612865299852
136-137	11.761115326784987	0.0	0.0	5.855102604818047E-5	0.4732386680344186	0.006440612865299852
138-139	12.460302404339334	0.0	0.0	5.855102604818047E-5	0.5078423244288933	0.009485266219805236
>>END_MODULE
