##FastQC	0.12.1
>>Basic Statistics	pass
#Measure	Value
Filename	LT3GC_L01_R2.fq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1707912
Total Bases	256.1 Mbp
Sequences flagged as poor quality	0
Sequence length	150
%GC	47
>>END_MODULE
>>Per base sequence quality	pass
#Base	Mean	Median	Lower Quartile	Upper Quartile	10th Percentile	90th Percentile
1	34.59601138700354	36.0	36.0	36.0	31.0	36.0
2	34.68005143122128	36.0	36.0	36.0	31.0	36.0
3	34.814095808214944	36.0	36.0	36.0	31.0	36.0
4	34.6369315280881	36.0	36.0	36.0	31.0	36.0
5	34.61965077826024	36.0	36.0	36.0	31.0	36.0
6	34.61764833316939	36.0	36.0	36.0	31.0	36.0
7	34.639046976659216	36.0	36.0	36.0	31.0	36.0
8	34.58013000669824	36.0	36.0	36.0	31.0	36.0
9	34.35619458145384	36.0	36.0	36.0	31.0	36.0
10-14	34.44215486512186	36.0	36.0	36.0	31.0	36.0
15-19	34.34845331609591	36.0	36.0	36.0	31.0	36.0
20-24	34.455276969773614	36.0	36.0	36.0	31.0	36.0
25-29	34.225079629395424	36.0	36.0	36.0	31.0	36.0
30-34	34.228293143909056	36.0	36.0	36.0	31.0	36.0
35-39	34.14131067642829	36.0	36.0	36.0	31.0	36.0
40-44	34.211759270969466	36.0	36.0	36.0	29.8	36.0
45-49	34.052583388371296	36.0	36.0	36.0	29.8	36.0
50-54	34.13253856170576	36.0	36.0	36.0	31.0	36.0
55-59	33.93263880106235	36.0	36.0	36.0	26.2	36.0
60-64	33.874227009354115	36.0	36.0	36.0	26.2	36.0
65-69	33.940231581018224	36.0	36.0	36.0	25.0	36.0
70-74	33.834337366328	36.0	36.0	36.0	25.0	36.0
75-79	33.826858643770876	36.0	36.0	36.0	25.0	36.0
80-84	33.70299020090029	36.0	36.0	36.0	25.0	36.0
85-89	33.643849566019796	36.0	36.0	36.0	25.0	36.0
90-94	33.764776522443775	36.0	36.0	36.0	25.0	36.0
95-99	33.66023788110863	36.0	36.0	36.0	25.0	36.0
100-104	33.59116500147549	36.0	36.0	36.0	25.0	36.0
105-109	33.36875869482736	36.0	36.0	36.0	25.0	36.0
110-114	33.56017663673538	36.0	36.0	36.0	25.0	36.0
115-119	33.431535933935706	36.0	36.0	36.0	25.0	36.0
120-124	33.228176510265165	36.0	36.0	36.0	25.0	36.0
125-129	33.349306990055695	36.0	36.0	36.0	25.0	36.0
130-134	33.33678819517634	36.0	36.0	36.0	24.2	36.0
135-139	33.155271700181274	36.0	36.0	36.0	24.2	36.0
140-144	33.004211458201596	36.0	36.0	36.0	21.8	36.0
145-149	32.821861899207924	36.0	36.0	36.0	21.0	36.0
150	32.892855720903654	36.0	36.0	36.0	21.0	36.0
>>END_MODULE
>>Per sequence quality scores	pass
#Quality	Count
17	26.0
18	98.0
19	207.0
20	391.0
21	786.0
22	1507.0
23	3124.0
24	7279.0
25	15479.0
26	25518.0
27	34963.0
28	45530.0
29	56533.0
30	69799.0
31	87508.0
32	112419.0
33	155424.0
34	247091.0
35	730747.0
36	113483.0
>>END_MODULE
>>Per base sequence content	warn
#Base	G	A	T	C
1	26.215660431428695	18.153315474833523	18.06441366708529	37.56661042665249
2	25.405004646946278	26.643194756534566	26.866552703749708	21.085247892769445
3	15.05363939802073	26.255255606956723	30.1234994436962	28.56760555132635
4	20.129756823065797	30.205526375884904	26.19237503000919	23.472341771040103
5	24.863902019994413	28.132361543691008	25.08606217322285	21.917674263091726
6	23.52614982828333	30.257384695111416	24.521550222367964	21.694915254237287
7	20.560854926072317	27.054545454545455	29.430654369784804	22.953945249597425
8	22.964027378378013	26.237358521722175	26.567906352783833	24.23070774711598
9	23.0317828367997	23.09308834551246	29.50539863219037	24.36973018549747
10-14	24.288515046304564	25.86361622610217	25.62571971190561	24.222149015687656
15-19	24.163540387960705	25.757140317506718	25.399038237451027	24.68028105708155
20-24	23.59862539124048	26.718981185557894	25.76622001094759	23.91617341225404
25-29	23.899396480064308	26.345740309121567	25.209400361123546	24.54546284969058
30-34	24.873411636186734	25.740010682878594	25.204777619404474	24.181800061530197
35-39	23.604340997538458	26.11472897340296	26.289047646206054	23.991882382852523
40-44	24.225052703103255	25.566119923816625	26.126662412396207	24.08216496068391
45-49	24.367182592345014	25.375116114897416	26.46363325914784	23.79406803360973
50-54	24.175840906069958	26.82127756004757	24.87916705459924	24.12371447928323
55-59	24.40195931927404	25.94107145617624	26.494668389920744	23.162300834628972
60-64	24.168088972021632	25.867137825077872	25.917600680364362	24.047172522536133
65-69	24.233439647315834	25.452794741404528	26.817462007214548	23.496303604065087
70-74	24.583401794829125	25.3049498510516	26.687347015638966	23.424301338480312
75-79	24.021972261565665	26.277134190115998	26.35251979033036	23.348373757987982
80-84	24.869513564651555	25.16467811511148	25.985992829994796	23.979815490242167
85-89	23.760465745435123	26.51755504727372	25.722995770954622	23.99898343633653
90-94	24.448937272348562	26.442227231401315	26.072363365804506	23.036472130445613
95-99	24.278180333993483	26.396505705341344	26.488957649420446	22.836356311244728
100-104	25.347858751937522	25.829741309899347	25.929125342049836	22.893274596113294
105-109	24.901361230249115	25.92154015862318	26.05800519529926	23.119093415828445
110-114	24.862682075901002	26.34344210497341	25.447901884728257	23.34597393439733
115-119	24.790467840264636	26.15371099549666	26.134699622056708	22.921121542181996
120-124	25.57494082529373	25.613572622448917	26.26507714821432	22.546409404043033
125-129	25.46176982737557	25.97541225746615	26.036872243114946	22.52594567204333
130-134	25.371956903915805	26.148368587877385	26.192889916826758	22.28678459138006
135-139	25.170374333906047	26.636659543235137	26.49262909911628	21.700337023742534
140-144	26.41465378855812	26.035841324744702	25.607846739230016	21.941658147467166
145-149	26.108002857426776	26.759033049778097	24.960590853609375	22.172373239185745
150	25.282163470162246	26.99390243187571	25.837697532014868	21.886236565947176
>>END_MODULE
>>Per sequence GC content	warn
#GC Content	Count
0	0.0
1	0.0
2	0.0
3	0.0
4	0.0
5	0.0
6	0.0
7	0.0
8	0.0
9	0.0
10	0.0
11	0.0
12	0.0
13	0.0
14	0.0
15	0.5
16	0.5
17	0.0
18	18.5
19	79.5
20	88.5
21	130.0
22	922.5
23	1906.5
24	2160.0
25	3331.5
26	4457.5
27	5167.5
28	6421.0
29	7819.5
30	11765.5
31	14513.0
32	15274.0
33	15249.0
34	14695.5
35	19516.0
36	22111.5
37	21284.5
38	28028.0
39	34124.0
40	34933.5
41	42706.0
42	56004.0
43	61912.0
44	69839.0
45	82546.5
46	88975.0
47	93194.5
48	94916.5
49	92653.0
50	84073.5
51	78315.0
52	75572.0
53	68824.5
54	60572.0
55	53095.5
56	51781.5
57	48839.5
58	40558.0
59	34933.5
60	32720.5
61	26493.5
62	20890.0
63	20513.5
64	18708.0
65	14821.5
66	9935.0
67	5899.0
68	3908.5
69	2614.5
70	2080.0
71	1174.5
72	744.5
73	921.5
74	1058.5
75	673.5
76	113.5
77	415.0
78	600.0
79	278.5
80	25.0
81	6.5
82	2.0
83	2.5
84	2.5
85	0.5
86	0.0
87	0.0
88	0.0
89	0.0
90	0.0
91	0.0
92	0.0
93	0.0
94	0.0
95	0.0
96	0.0
97	0.0
98	0.0
99	0.0
100	0.0
>>END_MODULE
>>Per base N content	pass
#Base	N-Count
1	0.08987582498395702
2	0.01984879783033318
3	0.012412817522214258
4	0.0059722046569144075
5	0.007904388516504364
6	0.009192511089564334
7	0.009485266219805236
8	0.008255694672793447
9	0.004215673875468994
10-14	0.00647574348092876
15-19	0.007658474207102005
20-24	0.00812688241548745
25-29	0.007658474207102005
30-34	0.0077638660539887305
35-39	0.007037833330991292
40-44	0.008068331389439269
45-49	0.0070729639466202004
50-54	0.008255694672793447
55-59	0.007916098721714
60-64	0.0070963843570394725
65-69	0.008220564057164537
70-74	0.008162013031116357
75-79	0.00929790293645106
80-84	0.010925621460590475
85-89	0.011593103157539732
90-94	0.011862437877361362
95-99	0.01252991957431062
100-104	0.01130034802729883
105-109	0.021570197996149686
110-114	0.026406512747729392
115-119	0.030036676362716577
120-124	0.029872733489781676
125-129	0.026910051571743743
130-134	0.02434551663083344
135-139	0.02899446809905897
140-144	0.04611478811554694
145-149	0.07035491289949365
150	0.1162823377316864
>>END_MODULE
>>Sequence Length Distribution	pass
#Length	Count
150	1707912.0
>>END_MODULE
>>Sequence Duplication Levels	fail
#Total Deduplicated Percentage	8.246395081150096
#Duplication Level	Percentage of total
1	6.836078147016425
2	1.363720190315685
3	0.6302437456389682
4	0.3371075069803446
5	0.192707723806785
6	0.12975470491049595
7	0.10233180999277366
8	0.08075957896917312
9	0.05228581552587251
>10	1.981696958820106
>50	3.594283053826814
>100	41.36729318201741
>500	30.020390980318467
>1k	13.311346601860683
>5k	0.0
>10k+	0.0
>>END_MODULE
>>Overrepresented sequences	warn
#Sequence	Count	Percentage	Possible Source
CTTGATGCAGGAATGAATCTTTATTCAAAGTTAAAGTGTGTGTGTGTGTT	2793	0.16353301575256804	No Hit
AATAAACAAAAACATACTCTATTGCAGCGTTCACGCGGCACACGGATTTG	2409	0.14104942175006674	No Hit
GCTGAATGTAATTGCGCATACCATAGATCGGAAGAGCGTCGTGTAGGGAA	2329	0.1363653396662123	Illumina Single End PCR Primer 1 (100% over 26bp)
TCCTGTACGAAAATTTCACCTAACCCACCACGGCCACTACCCAGTGGCCG	2213	0.12957342064462338	No Hit
GACTGTCCAAGCAGATCGACAAGCTGTCCGCCAACATCTCGAAGCTCACC	2192	0.1283438490976116	No Hit
CGTTCAGATGCGAACGTTTGATCACGTCAATCGACACGTCCGTCCAGAAC	2147	0.1257090529254435	No Hit
TAATGGCGAAACTTTTATTTCGCCCGAGCGGGGCCCGTCAATCACGAGAA	2010	0.11768756235684273	No Hit
TAAAGTGTCCATGTCCAACTTTTCTGCGAGATCCATAAACCATCACGATG	1892	0.11077854128315745	No Hit
CCTCTTACGGCTTACATATTTTTGCGAAACCAGGCCTTCGCCGCCTTCTT	1840	0.10773388792865207	No Hit
ATCAGCAATAAGTTATTCCCCGTAAGCTTTCACTTCAGATGTCGTATCAC	1830	0.10714837766817024	No Hit
CAGAGCTCGGCCGTGATGGCCCTGCAGGAAGCCAGCGAGGCGTACCTTGT	1763	0.10322545892294216	No Hit
TGCGACCGTGGGCCTACAGCTGACGAGCAAGCTGGAAACGCTCGCCCCCA	1763	0.10322545892294216	No Hit
>>END_MODULE
>>Adapter Content	fail
#Position	Illumina Universal Adapter	Illumina Small RNA 3' Adapter	Illumina Small RNA 5' Adapter	Nextera Transposase Sequence	PolyA	PolyG
1	0.0	0.0	0.0	0.0	0.0	0.0
2	0.0	0.0	0.0	0.0	0.0	0.0
3	0.0	0.0	0.0	0.0	0.001639428729349053	0.0
4	0.0	0.0	0.0	0.0	0.001639428729349053	1.1710205209636093E-4
5	0.0	0.0	0.0	0.0	0.030446533545053844	1.1710205209636093E-4
6	5.855102604818047E-5	0.0	0.0	0.0	0.030446533545053844	1.1710205209636093E-4
7	5.855102604818047E-5	0.0	0.0	0.0	0.030446533545053844	1.1710205209636093E-4
8	5.855102604818047E-5	0.0	0.0	0.0	0.030563635597150203	0.009016858011419791
9	5.855102604818047E-5	0.0	0.0	0.0	0.030563635597150203	0.009016858011419791
10-11	5.855102604818047E-5	0.0	0.0	0.0	0.030563635597150203	0.009016858011419791
12-13	5.855102604818047E-5	0.0	0.0	0.0	0.030797839701342925	0.009016858011419791
14-15	5.855102604818047E-5	0.0	0.0	0.0	0.031032043805535647	0.009046133524443882
16-17	5.855102604818047E-5	0.0	0.0	0.0	0.031968860222306536	0.009075409037467973
18-19	5.855102604818047E-5	0.0	0.0	0.0	0.031968860222306536	0.009075409037467973
20-21	2.634796172168121E-4	0.0	0.0	0.0	0.03199813573533063	0.009075409037467973
22-23	0.01238354200919017	0.0	0.0	0.0	0.03202741124835472	0.009104684550492063
24-25	0.09859992786513591	0.0	0.0	0.0	0.03202741124835472	0.009133960063516152
26-27	0.1904079367086829	0.0	0.0	0.0	0.03202741124835472	0.009485266219805236
28-29	0.19046648773473107	0.0	0.0	0.0	0.03202741124835472	0.009485266219805236
30-31	0.19954189677219902	0.0	0.0	0.0	0.03202741124835472	0.009543817245853417
32-33	0.2023523460225117	0.0	0.0	0.0	0.03202741124835472	0.009543817245853417
34-35	0.2023523460225117	0.0	0.0	0.0	0.03817526898341367	0.009543817245853417
36-37	0.2023523460225117	0.0	0.0	0.0	0.03846802411365457	0.009543817245853417
38-39	0.2023523460225117	0.0	0.0	0.0	0.03876077924389547	0.009543817245853417
40-41	0.2023523460225117	0.0	0.0	0.0	0.03893643232204001	0.009543817245853417
42-43	0.2023523460225117	0.0	0.0	0.0	0.03911208540018455	0.009543817245853417
44-45	0.2023523460225117	0.0	0.0	0.0	0.03917063642623273	0.009543817245853417
46-47	0.20241089704855988	0.0	0.0	0.0	0.03999035079090726	0.009543817245853417
48-49	0.20252799910065625	0.0	0.0	0.0	0.03999035079090726	0.009543817245853417
50-51	0.20252799910065625	0.0	0.0	0.0	0.04300572863238855	0.009543817245853417
52-53	0.20258655012670443	0.0	0.0	0.0	0.04607965749991803	0.009543817245853417
54-55	0.20325988692625852	0.0	0.0	0.0	0.0737742928207074	0.009543817245853417
56-57	0.2154970513703282	0.0	0.0	0.0	0.07380356833373147	0.009543817245853417
58-59	0.2722329956110151	0.0	0.0	0.0	0.07529661949796009	0.009602368271901597
60-61	0.3251631231585702	0.0	0.0	0.0	0.07541372155005645	0.009602368271901597
62-63	0.358507932493009	0.0	0.0	0.0	0.07556009911517689	0.009602368271901597
64-65	0.3730578624659818	0.0	0.0	0.0	0.07558937462820098	0.009602368271901597
66-67	0.4257830614223683	0.0	0.0	0.0	0.07567720116727325	0.009602368271901597
68-69	0.5845734440650338	0.0	0.0	0.0	0.07579430321936961	0.009602368271901597
70-71	0.6676866255404259	0.0	0.0	0.0	0.08267404878003082	0.009602368271901597
72-73	0.7346397238265203	0.0	0.0	0.0	0.08276187531910309	0.009631643784925686
74-75	0.7873941982959309	0.0	0.0	0.0	0.12430382830028713	0.009660919297949776
76-77	0.884413248457766	0.0	0.0	0.0	0.12436237932633531	0.009660919297949776
78-79	0.9583339188435938	0.0	0.0	0.0	0.12436237932633531	0.009660919297949776
80-81	1.0691710111527994	0.0	0.0	0.0	0.12436237932633531	0.009660919297949776
82-83	1.239320292848812	0.0	0.0	0.0	0.12436237932633531	0.009660919297949776
84-85	1.4646539165952346	0.0	0.0	0.0	0.12436237932633531	0.009660919297949776
86-87	1.5559642417173718	0.0	0.0	0.0	0.13923433994257314	0.009660919297949776
88-89	1.7237129313454087	0.0	0.0	0.0	0.13923433994257314	0.009660919297949776
90-91	1.9556335455222515	0.0	0.0	0.0	0.13926361545559723	0.009660919297949776
92-93	2.2364442664493254	0.0	0.0	0.0	0.14020043187236814	0.009660919297949776
94-95	2.5552838787946923	0.0	0.0	0.0	0.14652394268557162	0.009660919297949776
96-97	2.6929080655209403	0.0	0.0	0.0	0.15281817798575104	0.009719470323997958
98-99	2.8889076252172243	0.0	0.0	0.0	0.1528474534987751	0.009719470323997958
100-101	3.3172083807596646	0.0	0.0	0.0	0.1534329637592569	0.009719470323997958
102-103	3.697936427637958	0.0	0.0	0.0	0.15360861683740146	0.009719470323997958
104-105	3.9392837570085577	0.0	0.0	0.0	0.15369644337647373	0.009719470323997958
106-107	4.267257329417441	0.0	0.0	0.0	0.153784269915546	0.009748745837022049
108-109	4.526521272758784	0.0	0.0	0.0	0.15536514761884687	0.00992439891516659
110-111	4.8089714224152065	0.0	0.0	0.0	0.1558628313402564	0.011358899053347011
112-113	5.2351936165329365	0.0	0.0	0.0	0.1559213823663046	0.011358899053347011
114-115	5.83343872518022	0.0	0.0	0.0	0.1559213823663046	0.011358899053347011
116-117	6.278953482380825	0.0	0.0	0.0	0.15597993339235278	0.011358899053347011
118-119	6.758193630585183	0.0	0.0	0.0	0.15597993339235278	0.011358899053347011
120-121	7.137984861046705	0.0	0.0	5.855102604818047E-5	0.15597993339235278	0.011358899053347011
122-123	7.794546791637976	0.0	0.0	5.855102604818047E-5	0.15597993339235278	0.0125884706003588
124-125	8.444258252181612	0.0	0.0	5.855102604818047E-5	0.15668254570493093	0.0125884706003588
126-127	8.95965365897072	0.0	0.0	5.855102604818047E-5	0.15773646417379816	0.01261774611338289
128-129	9.367725035013514	0.0	0.0	5.855102604818047E-5	0.16215706664043583	0.012647021626406981
130-131	9.957919377579172	0.0	0.0	5.855102604818047E-5	0.1659628833335675	0.012705572652455161
132-133	10.707401786508907	0.0	0.0	5.855102604818047E-5	0.16774868962803705	0.012734848165479252
134-135	11.385686147764053	0.0	0.0	5.855102604818047E-5	0.16889043463597658	0.012793399191527433
136-137	12.068800968668175	0.0	0.0	5.855102604818047E-5	0.17357451671983098	0.012881225730599704
138-139	12.787631915461688	0.0	0.0	5.855102604818047E-5	0.18595805872902116	0.012881225730599704
>>END_MODULE
