Experiment description: Juicer version 1.6; BWA 0.7.18-r1243-dirty; 15 threads; openjdk version "22.0.1-internal" 2024-04-16; /home/ddpanchenko/Tools/juicer/scripts/juicer.sh -g T2T_Astel_plm -p /home/ddpanchenko/hybrid_anopheles_human/genome/chrom.sizes -s DpnII -y /home/ddpanchenko/Tools/juicer/restriction_sites/T2Thuman_AsteI2_plm_merged_ref_DpnII.txt -z /home/ddpanchenko/hybrid_anopheles_human/genome/T2Thuman_AsteI2_plm_merged_ref.fa -D /home/ddpanchenko/Tools/juicer/ -t 15                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      
Sequenced Read Pairs:  101,493,416
 Normal Paired: 55,454,786 (54.64%)
 Chimeric Paired: 33,524,972 (33.03%)
 Chimeric Ambiguous: 9,365,155 (9.23%)
 Unmapped: 3,148,503 (3.10%)
 Ligation Motif Present: 72,190,366 (71.13%)
Alignable (Normal+Chimeric Paired): 88,979,758 (87.67%)
Unique Reads: 77,929,096 (76.78%)
PCR Duplicates: 0 (0.00%)
Optical Duplicates: 11,050,662 (10.89%)
Library Complexity Estimate: 0
Intra-fragment Reads: 5,998,042 (5.91% / 7.70%)
Below MAPQ Threshold: 8,470,729 (8.35% / 10.87%)
Hi-C Contacts: 69,458,367 (68.44% / 89.13%)
 Ligation Motif Present: 49,618,227  (48.89% / 63.67%)
 3' Bias (Long Range): 67% - 33%
 Pair Type intra chrom %(L-I-O-R): 11% - 68% - 11% - 11%
 Pair Type inter chrom %(L-I-O-R): 25% - 25% - 25% - 25%
 DE: 49%
 Cis/all (FF and RR orient): 70.5%
Inter-chromosomal: 10,436,546  (10.28% / 13.39%)
Intra-chromosomal: 59,021,821  (58.15% / 75.74%)
Short Range (<20,000bp): 41,766,781  (41.15% / 53.60%)
Long Range (>20,000bp): 17,255,040  (17.00% / 22.14%)