Experiment description: Juicer version 1.6; BWA 0.7.18-r1243-dirty; 15 threads; openjdk version "22.0.1-internal" 2024-04-16; /home/ddpanchenko/Tools/juicer/scripts/juicer.sh -g T2T_Astel_plm -p /home/ddpanchenko/hybrid_anopheles_human/genome/chrom.sizes -s DpnII -y /home/ddpanchenko/Tools/juicer/restriction_sites/T2Thuman_AsteI2_plm_merged_ref_DpnII.txt -z /home/ddpanchenko/hybrid_anopheles_human/genome/T2Thuman_AsteI2_plm_merged_ref.fa -D /home/ddpanchenko/Tools/juicer/ -t 15                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      
Sequenced Read Pairs:  74,600,652
 Normal Paired: 43,129,289 (57.81%)
 Chimeric Paired: 23,949,525 (32.10%)
 Chimeric Ambiguous: 6,532,521 (8.76%)
 Unmapped: 989,317 (1.33%)
 Ligation Motif Present: 49,624,152 (66.52%)
Alignable (Normal+Chimeric Paired): 67,078,814 (89.92%)
Unique Reads: 58,915,442 (78.97%)
PCR Duplicates: 0 (0.00%)
Optical Duplicates: 8,163,372 (10.94%)
Library Complexity Estimate: 0
Intra-fragment Reads: 4,183,017 (5.61% / 7.10%)
Below MAPQ Threshold: 6,054,512 (8.12% / 10.28%)
Hi-C Contacts: 52,860,930 (70.86% / 89.72%)
 Ligation Motif Present: 35,893,017  (48.11% / 60.92%)
 3' Bias (Long Range): 65% - 35%
 Pair Type intra chrom %(L-I-O-R): 11% - 69% - 10% - 11%
 Pair Type inter chrom %(L-I-O-R): 25% - 25% - 25% - 25%
 DE: 49%
 Cis/all (FF and RR orient): 70.8%
Inter-chromosomal: 7,805,354  (10.46% / 13.25%)
Intra-chromosomal: 45,055,576  (60.40% / 76.47%)
Short Range (<20,000bp): 31,429,607  (42.13% / 53.35%)
Long Range (>20,000bp): 13,625,969  (18.27% / 23.13%)