Experiment description: Juicer version 1.6; BWA 0.7.18-r1243-dirty; 15 threads; openjdk version "22.0.1-internal" 2024-04-16; /home/ddpanchenko/Tools/juicer/scripts/juicer.sh -g T2T_Astel_plm -p /home/ddpanchenko/hybrid_anopheles_human/genome/chrom.sizes -s DpnII -y /home/ddpanchenko/Tools/juicer/restriction_sites/T2Thuman_AsteI2_plm_merged_ref_DpnII.txt -z /home/ddpanchenko/hybrid_anopheles_human/genome/T2Thuman_AsteI2_plm_merged_ref.fa -D /home/ddpanchenko/Tools/juicer/ -t 15                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      
Sequenced Read Pairs:  66,400,679
 Normal Paired: 37,286,748 (56.15%)
 Chimeric Paired: 21,972,629 (33.09%)
 Chimeric Ambiguous: 5,577,007 (8.40%)
 Unmapped: 1,564,295 (2.36%)
 Ligation Motif Present: 45,046,265 (67.84%)
Alignable (Normal+Chimeric Paired): 59,259,377 (89.25%)
Unique Reads: 51,523,198 (77.59%)
PCR Duplicates: 0 (0.00%)
Optical Duplicates: 7,736,179 (11.65%)
Library Complexity Estimate: 0
Intra-fragment Reads: 3,175,547 (4.78% / 6.16%)
Below MAPQ Threshold: 5,280,284 (7.95% / 10.25%)
Hi-C Contacts: 46,242,914 (69.64% / 89.75%)
 Ligation Motif Present: 32,122,879  (48.38% / 62.35%)
 3' Bias (Long Range): 64% - 36%
 Pair Type intra chrom %(L-I-O-R): 12% - 65% - 11% - 12%
 Pair Type inter chrom %(L-I-O-R): 25% - 25% - 25% - 25%
 DE: 46%
 Cis/all (FF and RR orient): 74.0%
Inter-chromosomal: 6,472,920  (9.75% / 12.56%)
Intra-chromosomal: 39,769,994  (59.89% / 77.19%)
Short Range (<20,000bp): 27,150,966  (40.89% / 52.70%)
Long Range (>20,000bp): 12,619,028  (19.00% / 24.49%)