Experiment description: Juicer version 1.6; BWA 0.7.18-r1243-dirty; 15 threads; openjdk version "22.0.1-internal" 2024-04-16; /home/ddpanchenko/Tools/juicer/scripts/juicer.sh -g T2T_Astel_plm -p /home/ddpanchenko/hybrid_anopheles_human/genome/chrom.sizes -s DpnII -y /home/ddpanchenko/Tools/juicer/restriction_sites/T2Thuman_AsteI2_plm_merged_ref_DpnII.txt -z /home/ddpanchenko/hybrid_anopheles_human/genome/T2Thuman_AsteI2_plm_merged_ref.fa -D /home/ddpanchenko/Tools/juicer/ -t 15                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      
Sequenced Read Pairs:  89,189,476
 Normal Paired: 50,681,073 (56.82%)
 Chimeric Paired: 28,874,328 (32.37%)
 Chimeric Ambiguous: 8,086,492 (9.07%)
 Unmapped: 1,547,583 (1.74%)
 Ligation Motif Present: 65,381,170 (73.31%)
Alignable (Normal+Chimeric Paired): 79,555,401 (89.20%)
Unique Reads: 70,284,723 (78.80%)
PCR Duplicates: 0 (0.00%)
Optical Duplicates: 9,270,678 (10.39%)
Library Complexity Estimate: 0
Intra-fragment Reads: 4,379,736 (4.91% / 6.23%)
Below MAPQ Threshold: 7,832,632 (8.78% / 11.14%)
Hi-C Contacts: 62,452,091 (70.02% / 88.86%)
 Ligation Motif Present: 46,414,703  (52.04% / 66.04%)
 3' Bias (Long Range): 69% - 31%
 Pair Type intra chrom %(L-I-O-R): 10% - 71% - 10% - 10%
 Pair Type inter chrom %(L-I-O-R): 25% - 25% - 25% - 25%
 DE: 52%
 Cis/all (FF and RR orient): 69.3%
Inter-chromosomal: 9,180,170  (10.29% / 13.06%)
Intra-chromosomal: 53,271,921  (59.73% / 75.79%)
Short Range (<20,000bp): 38,210,281  (42.84% / 54.36%)
Long Range (>20,000bp): 15,061,640  (16.89% / 21.43%)