Experiment description: Juicer version 1.6; BWA 0.7.18-r1243-dirty; 15 threads; openjdk version "22.0.1-internal" 2024-04-16; /home/ddpanchenko/Tools/juicer/scripts/juicer.sh -g T2T_Astel_plm -p /home/ddpanchenko/hybrid_anopheles_human/genome/chrom.sizes -s DpnII -y /home/ddpanchenko/Tools/juicer/restriction_sites/T2Thuman_AsteI2_plm_merged_ref_DpnII.txt -z /home/ddpanchenko/hybrid_anopheles_human/genome/T2Thuman_AsteI2_plm_merged_ref.fa -D /home/ddpanchenko/Tools/juicer/ -t 15                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      
Sequenced Read Pairs:  101,493,416
 Normal Paired: 55,454,786 (54.64%)
 Chimeric Paired: 33,524,972 (33.03%)
 Chimeric Ambiguous: 9,365,155 (9.23%)
 Unmapped: 3,148,503 (3.10%)
 Ligation Motif Present: 72,190,366 (71.13%)
Alignable (Normal+Chimeric Paired): 88,979,758 (87.67%)
Unique Reads: 77,929,096 (76.78%)
PCR Duplicates: 0 (0.00%)
Optical Duplicates: 11,050,662 (10.89%)
Library Complexity Estimate: 0
Intra-fragment Reads: 5,998,042 (5.91% / 7.70%)
Below MAPQ Threshold: 14,102,293 (13.89% / 18.10%)
Hi-C Contacts: 63,826,803 (62.89% / 81.90%)
 Ligation Motif Present: 44,895,315  (44.23% / 57.61%)
 3' Bias (Long Range): 66% - 34%
 Pair Type intra chrom %(L-I-O-R): 10% - 69% - 10% - 10%
 Pair Type inter chrom %(L-I-O-R): 25% - 25% - 25% - 25%
 DE: 51%
 Cis/all (FF and RR orient): 72.0%
Inter-chromosomal: 8,773,462  (8.64% / 11.26%)
Intra-chromosomal: 55,053,341  (54.24% / 70.65%)
Short Range (<20,000bp): 39,499,249  (38.92% / 50.69%)
Long Range (>20,000bp): 15,554,092  (15.33% / 19.96%)