## htsjdk.samtools.metrics.StringHeader
# MarkDuplicates --INPUT /Data/NGS_Data/2022-07-25-BGI/Result/P100/IRs/P100.primary.bam --OUTPUT /dev/stdout --METRICS_FILE /Data/NGS_Data/2022-07-25-BGI/Result/P100/P100.md_metrics.txt --REMOVE_DUPLICATES true --ASSUME_SORT_ORDER queryname --TMP_DIR /tmp/tmpyecgfyoz --VERBOSITY ERROR --MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP 50000 --MAX_FILE_HANDLES_FOR_READ_ENDS_MAP 8000 --SORTING_COLLECTION_SIZE_RATIO 0.25 --TAG_DUPLICATE_SET_MEMBERS false --REMOVE_SEQUENCING_DUPLICATES false --TAGGING_POLICY DontTag --CLEAR_DT true --DUPLEX_UMI false --ADD_PG_TAG_TO_READS true --ASSUME_SORTED false --DUPLICATE_SCORING_STRATEGY SUM_OF_BASE_QUALITIES --PROGRAM_RECORD_ID MarkDuplicates --PROGRAM_GROUP_NAME MarkDuplicates --READ_NAME_REGEX <optimized capture of last three ':' separated fields as numeric values> --OPTICAL_DUPLICATE_PIXEL_DISTANCE 100 --MAX_OPTICAL_DUPLICATE_SET_SIZE 300000 --QUIET false --VALIDATION_STRINGENCY STRICT --COMPRESSION_LEVEL 2 --MAX_RECORDS_IN_RAM 500000 --CREATE_INDEX false --CREATE_MD5_FILE false --GA4GH_CLIENT_SECRETS client_secrets.json --help false --version false --showHidden false --USE_JDK_DEFLATER false --USE_JDK_INFLATER false
## htsjdk.samtools.metrics.StringHeader
# Started on: Thu Jul 28 20:15:42 NOVT 2022

## METRICS CLASS	picard.sam.DuplicationMetrics
LIBRARY	UNPAIRED_READS_EXAMINED	READ_PAIRS_EXAMINED	SECONDARY_OR_SUPPLEMENTARY_RDS	UNMAPPED_READS	UNPAIRED_READ_DUPLICATES	READ_PAIR_DUPLICATES	READ_PAIR_OPTICAL_DUPLICATES	PERCENT_DUPLICATION	ESTIMATED_LIBRARY_SIZE
L-001	2438	31803185	77346	21942	1475	2209429	0	0.069492	218163723

## HISTOGRAM	java.lang.Double
BIN	CoverageMult	all_sets	non_optical_sets
1.0	1	27534962	27534962
2.0	1.864351	1919329	1919329
3.0	2.611453	129452	129452
4.0	3.257211	9266	9266
5.0	3.815373	658	658
6.0	4.29782	53	53
7.0	4.714824	7	7
8.0	5.075261	3	3
9.0	5.386806	4	4
10.0	5.656089	2	2
11.0	5.888845	4	4
12.0	6.090027	0	0
13.0	6.263919	3	3
14.0	6.414223	1	1
15.0	6.544138	0	0
16.0	6.65643	2	2
17.0	6.75349	0	0
18.0	6.837384	1	1
19.0	6.909898	1	1
20.0	6.972575	0	0
21.0	7.02675	0	0
22.0	7.073576	2	2
23.0	7.114051	0	0
24.0	7.149035	0	0
25.0	7.179273	2	2
26.0	7.20541	1	1
27.0	7.228001	0	0
28.0	7.247528	0	0
29.0	7.264406	0	0
30.0	7.278994	1	1
31.0	7.291604	0	0
32.0	7.302503	1	1
33.0	7.311923	0	0
34.0	7.320066	0	0
35.0	7.327104	0	0
36.0	7.333188	0	0
37.0	7.338446	0	0
38.0	7.342991	0	0
39.0	7.346919	0	0
40.0	7.350315	0	0
41.0	7.35325	0	0
42.0	7.355787	0	0
43.0	7.357979	0	0
44.0	7.359875	0	0
45.0	7.361513	0	0
46.0	7.362929	0	0
47.0	7.364153	0	0
48.0	7.36521	0	0
49.0	7.366125	0	0
50.0	7.366915	0	0
51.0	7.367598	0	0
52.0	7.368189	0	0
53.0	7.368699	0	0
54.0	7.36914	0	0
55.0	7.369522	0	0
56.0	7.369851	0	0
57.0	7.370136	0	0
58.0	7.370382	0	0
59.0	7.370595	0	0
60.0	7.370779	1	1
61.0	7.370938	0	0
62.0	7.371075	0	0
63.0	7.371194	0	0
64.0	7.371297	0	0
65.0	7.371386	0	0
66.0	7.371462	0	0
67.0	7.371529	0	0
68.0	7.371586	0	0
69.0	7.371635	0	0
70.0	7.371678	0	0
71.0	7.371715	0	0
72.0	7.371747	0	0
73.0	7.371775	0	0
74.0	7.371799	0	0
75.0	7.37182	0	0
76.0	7.371837	0	0
77.0	7.371853	0	0
78.0	7.371866	0	0
79.0	7.371878	0	0
80.0	7.371888	0	0
81.0	7.371896	0	0
82.0	7.371904	0	0
83.0	7.37191	0	0
84.0	7.371916	0	0
85.0	7.37192	0	0
86.0	7.371925	0	0
87.0	7.371928	0	0
88.0	7.371931	0	0
89.0	7.371934	0	0
90.0	7.371936	0	0
91.0	7.371938	0	0
92.0	7.37194	0	0
93.0	7.371942	0	0
94.0	7.371943	0	0
95.0	7.371944	0	0
96.0	7.371945	0	0
97.0	7.371946	0	0
98.0	7.371947	0	0
99.0	7.371947	0	0
100.0	7.371948	0	0