## htsjdk.samtools.metrics.StringHeader
# MarkDuplicates --INPUT /Data/NGS_Data/2022-07-25-BGI/Result/P96/IRs/P96.primary.bam --OUTPUT /dev/stdout --METRICS_FILE /Data/NGS_Data/2022-07-25-BGI/Result/P96/P96.md_metrics.txt --REMOVE_DUPLICATES true --ASSUME_SORT_ORDER queryname --TMP_DIR /tmp/tmpz58d3314 --VERBOSITY ERROR --MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP 50000 --MAX_FILE_HANDLES_FOR_READ_ENDS_MAP 8000 --SORTING_COLLECTION_SIZE_RATIO 0.25 --TAG_DUPLICATE_SET_MEMBERS false --REMOVE_SEQUENCING_DUPLICATES false --TAGGING_POLICY DontTag --CLEAR_DT true --DUPLEX_UMI false --ADD_PG_TAG_TO_READS true --ASSUME_SORTED false --DUPLICATE_SCORING_STRATEGY SUM_OF_BASE_QUALITIES --PROGRAM_RECORD_ID MarkDuplicates --PROGRAM_GROUP_NAME MarkDuplicates --READ_NAME_REGEX <optimized capture of last three ':' separated fields as numeric values> --OPTICAL_DUPLICATE_PIXEL_DISTANCE 100 --MAX_OPTICAL_DUPLICATE_SET_SIZE 300000 --QUIET false --VALIDATION_STRINGENCY STRICT --COMPRESSION_LEVEL 2 --MAX_RECORDS_IN_RAM 500000 --CREATE_INDEX false --CREATE_MD5_FILE false --GA4GH_CLIENT_SECRETS client_secrets.json --help false --version false --showHidden false --USE_JDK_DEFLATER false --USE_JDK_INFLATER false
## htsjdk.samtools.metrics.StringHeader
# Started on: Fri Jul 29 01:42:47 NOVT 2022

## METRICS CLASS	picard.sam.DuplicationMetrics
LIBRARY	UNPAIRED_READS_EXAMINED	READ_PAIRS_EXAMINED	SECONDARY_OR_SUPPLEMENTARY_RDS	UNMAPPED_READS	UNPAIRED_READ_DUPLICATES	READ_PAIR_DUPLICATES	READ_PAIR_OPTICAL_DUPLICATES	PERCENT_DUPLICATION	ESTIMATED_LIBRARY_SIZE
L-001	5740	34852328	92384	39788	3211	2072774	0	0.059514	281273055

## HISTOGRAM	java.lang.Double
BIN	CoverageMult	all_sets	non_optical_sets
1.0	1	30827611	30827611
2.0	1.88346	1839229	1839229
3.0	2.663962	105716	105716
4.0	3.353504	6454	6454
5.0	3.962686	447	447
6.0	4.500875	44	44
7.0	4.976343	14	14
8.0	5.3964	6	6
9.0	5.767504	4	4
10.0	6.095359	4	4
11.0	6.385006	4	4
12.0	6.640898	3	3
13.0	6.866968	2	2
14.0	7.066691	3	3
15.0	7.243139	1	1
16.0	7.399024	1	1
17.0	7.536742	1	1
18.0	7.65841	1	1
19.0	7.765899	0	0
20.0	7.860862	1	1
21.0	7.944757	0	0
22.0	8.018875	1	1
23.0	8.084356	0	0
24.0	8.142205	0	0
25.0	8.193313	0	0
26.0	8.238464	0	0
27.0	8.278354	1	1
28.0	8.313595	0	0
29.0	8.344729	1	1
30.0	8.372234	1	1
31.0	8.396534	0	0
32.0	8.418002	0	0
33.0	8.436969	0	0
34.0	8.453725	1	1
35.0	8.468528	0	0
36.0	8.481606	0	0
37.0	8.49316	0	0
38.0	8.503367	0	0
39.0	8.512385	0	0
40.0	8.520352	0	0
41.0	8.52739	0	0
42.0	8.533608	0	0
43.0	8.539102	1	1
44.0	8.543955	0	0
45.0	8.548243	0	0
46.0	8.552031	0	0
47.0	8.555377	0	0
48.0	8.558334	0	0
49.0	8.560946	0	0
50.0	8.563254	0	0
51.0	8.565292	0	0
52.0	8.567093	1	1
53.0	8.568685	0	0
54.0	8.57009	0	0
55.0	8.571332	0	0
56.0	8.572429	0	0
57.0	8.573399	0	0
58.0	8.574255	0	0
59.0	8.575012	0	0
60.0	8.57568	0	0
61.0	8.57627	0	0
62.0	8.576792	0	0
63.0	8.577253	0	0
64.0	8.57766	0	0
65.0	8.57802	0	0
66.0	8.578338	0	0
67.0	8.578618	0	0
68.0	8.578867	0	0
69.0	8.579086	0	0
70.0	8.579279	0	0
71.0	8.57945	0	0
72.0	8.579601	0	0
73.0	8.579735	0	0
74.0	8.579853	0	0
75.0	8.579957	0	0
76.0	8.580049	0	0
77.0	8.58013	0	0
78.0	8.580202	0	0
79.0	8.580266	0	0
80.0	8.580322	0	0
81.0	8.580371	0	0
82.0	8.580415	0	0
83.0	8.580454	0	0
84.0	8.580488	0	0
85.0	8.580518	0	0
86.0	8.580545	0	0
87.0	8.580568	0	0
88.0	8.580589	0	0
89.0	8.580607	0	0
90.0	8.580624	0	0
91.0	8.580638	0	0
92.0	8.580651	0	0
93.0	8.580662	0	0
94.0	8.580672	0	0
95.0	8.580681	0	0
96.0	8.580688	0	0
97.0	8.580695	0	0
98.0	8.580701	0	0
99.0	8.580706	0	0
100.0	8.580711	0	0
103.0	0	1	1