607816 + 0 in total (QC-passed reads + QC-failed reads) 603386 + 0 primary 0 + 0 secondary 4430 + 0 supplementary 124208 + 0 duplicates 124208 + 0 primary duplicates 362171 + 0 mapped (59.59% : N/A) 357741 + 0 primary mapped (59.29% : N/A) 603386 + 0 paired in sequencing 301693 + 0 read1 301693 + 0 read2 350648 + 0 properly paired (58.11% : N/A) 356130 + 0 with itself and mate mapped 1611 + 0 singletons (0.27% : N/A) 2010 + 0 with mate mapped to a different chr 1308 + 0 with mate mapped to a different chr (mapQ>=5)