220074 + 0 in total (QC-passed reads + QC-failed reads) 218572 + 0 primary 0 + 0 secondary 1502 + 0 supplementary 25514 + 0 duplicates 25514 + 0 primary duplicates 144568 + 0 mapped (65.69% : N/A) 143066 + 0 primary mapped (65.45% : N/A) 218572 + 0 paired in sequencing 109286 + 0 read1 109286 + 0 read2 139986 + 0 properly paired (64.05% : N/A) 142104 + 0 with itself and mate mapped 962 + 0 singletons (0.44% : N/A) 1062 + 0 with mate mapped to a different chr 810 + 0 with mate mapped to a different chr (mapQ>=5)