193652 + 0 in total (QC-passed reads + QC-failed reads) 192412 + 0 primary 0 + 0 secondary 1240 + 0 supplementary 34164 + 0 duplicates 34164 + 0 primary duplicates 112678 + 0 mapped (58.19% : N/A) 111438 + 0 primary mapped (57.92% : N/A) 192412 + 0 paired in sequencing 96206 + 0 read1 96206 + 0 read2 109376 + 0 properly paired (56.84% : N/A) 110770 + 0 with itself and mate mapped 668 + 0 singletons (0.35% : N/A) 662 + 0 with mate mapped to a different chr 499 + 0 with mate mapped to a different chr (mapQ>=5)