885548 + 0 in total (QC-passed reads + QC-failed reads) 870438 + 0 primary 0 + 0 secondary 15110 + 0 supplementary 60249 + 0 duplicates 60249 + 0 primary duplicates 836841 + 0 mapped (94.50% : N/A) 821731 + 0 primary mapped (94.40% : N/A) 870438 + 0 paired in sequencing 435219 + 0 read1 435219 + 0 read2 755574 + 0 properly paired (86.80% : N/A) 797648 + 0 with itself and mate mapped 24083 + 0 singletons (2.77% : N/A) 34104 + 0 with mate mapped to a different chr 27960 + 0 with mate mapped to a different chr (mapQ>=5)