367288 + 0 in total (QC-passed reads + QC-failed reads) 362104 + 0 primary 0 + 0 secondary 5184 + 0 supplementary 20624 + 0 duplicates 20624 + 0 primary duplicates 330109 + 0 mapped (89.88% : N/A) 324925 + 0 primary mapped (89.73% : N/A) 362104 + 0 paired in sequencing 181052 + 0 read1 181052 + 0 read2 298454 + 0 properly paired (82.42% : N/A) 314578 + 0 with itself and mate mapped 10347 + 0 singletons (2.86% : N/A) 13922 + 0 with mate mapped to a different chr 11782 + 0 with mate mapped to a different chr (mapQ>=5)