26416683 + 0 in total (QC-passed reads + QC-failed reads) 26288608 + 0 primary 0 + 0 secondary 128075 + 0 supplementary 0 + 0 duplicates 0 + 0 primary duplicates 26407822 + 0 mapped (99.97% : N/A) 26279747 + 0 primary mapped (99.97% : N/A) 26288608 + 0 paired in sequencing 13144304 + 0 read1 13144304 + 0 read2 26157568 + 0 properly paired (99.50% : N/A) 26279242 + 0 with itself and mate mapped 505 + 0 singletons (0.00% : N/A) 97162 + 0 with mate mapped to a different chr 88566 + 0 with mate mapped to a different chr (mapQ>=5)