33409 + 0 in total (QC-passed reads + QC-failed reads) 33238 + 0 primary 0 + 0 secondary 171 + 0 supplementary 0 + 0 duplicates 0 + 0 primary duplicates 19262 + 0 mapped (57.66% : N/A) 19091 + 0 primary mapped (57.44% : N/A) 33238 + 0 paired in sequencing 16619 + 0 read1 16619 + 0 read2 19000 + 0 properly paired (57.16% : N/A) 19088 + 0 with itself and mate mapped 3 + 0 singletons (0.01% : N/A) 0 + 0 with mate mapped to a different chr 0 + 0 with mate mapped to a different chr (mapQ>=5)