62893 + 0 in total (QC-passed reads + QC-failed reads) 61610 + 0 primary 0 + 0 secondary 1283 + 0 supplementary 0 + 0 duplicates 0 + 0 primary duplicates 43346 + 0 mapped (68.92% : N/A) 42063 + 0 primary mapped (68.27% : N/A) 61610 + 0 paired in sequencing 30805 + 0 read1 30805 + 0 read2 41578 + 0 properly paired (67.49% : N/A) 41922 + 0 with itself and mate mapped 141 + 0 singletons (0.23% : N/A) 0 + 0 with mate mapped to a different chr 0 + 0 with mate mapped to a different chr (mapQ>=5)