39336 + 0 in total (QC-passed reads + QC-failed reads) 38614 + 0 primary 0 + 0 secondary 722 + 0 supplementary 0 + 0 duplicates 0 + 0 primary duplicates 16349 + 0 mapped (41.56% : N/A) 15627 + 0 primary mapped (40.47% : N/A) 38614 + 0 paired in sequencing 19307 + 0 read1 19307 + 0 read2 13250 + 0 properly paired (34.31% : N/A) 13312 + 0 with itself and mate mapped 2315 + 0 singletons (6.00% : N/A) 0 + 0 with mate mapped to a different chr 0 + 0 with mate mapped to a different chr (mapQ>=5)