44200 + 0 in total (QC-passed reads + QC-failed reads) 43590 + 0 primary 0 + 0 secondary 610 + 0 supplementary 0 + 0 duplicates 0 + 0 primary duplicates 32923 + 0 mapped (74.49% : N/A) 32313 + 0 primary mapped (74.13% : N/A) 43590 + 0 paired in sequencing 21795 + 0 read1 21795 + 0 read2 30782 + 0 properly paired (70.62% : N/A) 31448 + 0 with itself and mate mapped 865 + 0 singletons (1.98% : N/A) 0 + 0 with mate mapped to a different chr 0 + 0 with mate mapped to a different chr (mapQ>=5)