68736 + 0 in total (QC-passed reads + QC-failed reads) 66692 + 0 primary 0 + 0 secondary 2044 + 0 supplementary 0 + 0 duplicates 0 + 0 primary duplicates 67679 + 0 mapped (98.46% : N/A) 65635 + 0 primary mapped (98.42% : N/A) 66692 + 0 paired in sequencing 33346 + 0 read1 33346 + 0 read2 64946 + 0 properly paired (97.38% : N/A) 65558 + 0 with itself and mate mapped 77 + 0 singletons (0.12% : N/A) 0 + 0 with mate mapped to a different chr 0 + 0 with mate mapped to a different chr (mapQ>=5)