19544 + 0 in total (QC-passed reads + QC-failed reads) 19346 + 0 primary 0 + 0 secondary 198 + 0 supplementary 0 + 0 duplicates 0 + 0 primary duplicates 12635 + 0 mapped (64.65% : N/A) 12437 + 0 primary mapped (64.29% : N/A) 19346 + 0 paired in sequencing 9673 + 0 read1 9673 + 0 read2 11350 + 0 properly paired (58.67% : N/A) 11422 + 0 with itself and mate mapped 1015 + 0 singletons (5.25% : N/A) 0 + 0 with mate mapped to a different chr 0 + 0 with mate mapped to a different chr (mapQ>=5)