52958 + 0 in total (QC-passed reads + QC-failed reads) 52772 + 0 primary 0 + 0 secondary 186 + 0 supplementary 0 + 0 duplicates 0 + 0 primary duplicates 16385 + 0 mapped (30.94% : N/A) 16199 + 0 primary mapped (30.70% : N/A) 52772 + 0 paired in sequencing 26386 + 0 read1 26386 + 0 read2 16026 + 0 properly paired (30.37% : N/A) 16108 + 0 with itself and mate mapped 91 + 0 singletons (0.17% : N/A) 0 + 0 with mate mapped to a different chr 0 + 0 with mate mapped to a different chr (mapQ>=5)