62139 + 0 in total (QC-passed reads + QC-failed reads) 61610 + 0 primary 0 + 0 secondary 529 + 0 supplementary 0 + 0 duplicates 0 + 0 primary duplicates 18703 + 0 mapped (30.10% : N/A) 18174 + 0 primary mapped (29.50% : N/A) 61610 + 0 paired in sequencing 30805 + 0 read1 30805 + 0 read2 18016 + 0 properly paired (29.24% : N/A) 18120 + 0 with itself and mate mapped 54 + 0 singletons (0.09% : N/A) 0 + 0 with mate mapped to a different chr 0 + 0 with mate mapped to a different chr (mapQ>=5)