39308 + 0 in total (QC-passed reads + QC-failed reads) 38614 + 0 primary 0 + 0 secondary 694 + 0 supplementary 0 + 0 duplicates 0 + 0 primary duplicates 15295 + 0 mapped (38.91% : N/A) 14601 + 0 primary mapped (37.81% : N/A) 38614 + 0 paired in sequencing 19307 + 0 read1 19307 + 0 read2 12260 + 0 properly paired (31.75% : N/A) 12306 + 0 with itself and mate mapped 2295 + 0 singletons (5.94% : N/A) 0 + 0 with mate mapped to a different chr 0 + 0 with mate mapped to a different chr (mapQ>=5)