44041 + 0 in total (QC-passed reads + QC-failed reads) 43590 + 0 primary 0 + 0 secondary 451 + 0 supplementary 0 + 0 duplicates 0 + 0 primary duplicates 12382 + 0 mapped (28.11% : N/A) 11931 + 0 primary mapped (27.37% : N/A) 43590 + 0 paired in sequencing 21795 + 0 read1 21795 + 0 read2 11080 + 0 properly paired (25.42% : N/A) 11550 + 0 with itself and mate mapped 381 + 0 singletons (0.87% : N/A) 0 + 0 with mate mapped to a different chr 0 + 0 with mate mapped to a different chr (mapQ>=5)