19426 + 0 in total (QC-passed reads + QC-failed reads) 19346 + 0 primary 0 + 0 secondary 80 + 0 supplementary 0 + 0 duplicates 0 + 0 primary duplicates 10592 + 0 mapped (54.52% : N/A) 10512 + 0 primary mapped (54.34% : N/A) 19346 + 0 paired in sequencing 9673 + 0 read1 9673 + 0 read2 8740 + 0 properly paired (45.18% : N/A) 8882 + 0 with itself and mate mapped 1630 + 0 singletons (8.43% : N/A) 0 + 0 with mate mapped to a different chr 0 + 0 with mate mapped to a different chr (mapQ>=5)