44218 + 0 in total (QC-passed reads + QC-failed reads) 43590 + 0 primary 0 + 0 secondary 628 + 0 supplementary 0 + 0 duplicates 0 + 0 primary duplicates 35661 + 0 mapped (80.65% : N/A) 35033 + 0 primary mapped (80.37% : N/A) 43590 + 0 paired in sequencing 21795 + 0 read1 21795 + 0 read2 33290 + 0 properly paired (76.37% : N/A) 34146 + 0 with itself and mate mapped 887 + 0 singletons (2.03% : N/A) 0 + 0 with mate mapped to a different chr 0 + 0 with mate mapped to a different chr (mapQ>=5)