68053 + 0 in total (QC-passed reads + QC-failed reads) 66692 + 0 primary 0 + 0 secondary 1361 + 0 supplementary 0 + 0 duplicates 0 + 0 primary duplicates 41307 + 0 mapped (60.70% : N/A) 39946 + 0 primary mapped (59.90% : N/A) 66692 + 0 paired in sequencing 33346 + 0 read1 33346 + 0 read2 39458 + 0 properly paired (59.16% : N/A) 39818 + 0 with itself and mate mapped 128 + 0 singletons (0.19% : N/A) 0 + 0 with mate mapped to a different chr 0 + 0 with mate mapped to a different chr (mapQ>=5)