19977 + 0 in total (QC-passed reads + QC-failed reads) 19346 + 0 primary 0 + 0 secondary 631 + 0 supplementary 0 + 0 duplicates 0 + 0 primary duplicates 13063 + 0 mapped (65.39% : N/A) 12432 + 0 primary mapped (64.26% : N/A) 19346 + 0 paired in sequencing 9673 + 0 read1 9673 + 0 read2 10474 + 0 properly paired (54.14% : N/A) 11410 + 0 with itself and mate mapped 1022 + 0 singletons (5.28% : N/A) 0 + 0 with mate mapped to a different chr 0 + 0 with mate mapped to a different chr (mapQ>=5)