28031 + 0 in total (QC-passed reads + QC-failed reads) 27662 + 0 primary 0 + 0 secondary 369 + 0 supplementary 0 + 0 duplicates 0 + 0 primary duplicates 23220 + 0 mapped (82.84% : N/A) 22851 + 0 primary mapped (82.61% : N/A) 27662 + 0 paired in sequencing 13831 + 0 read1 13831 + 0 read2 21318 + 0 properly paired (77.07% : N/A) 22044 + 0 with itself and mate mapped 807 + 0 singletons (2.92% : N/A) 0 + 0 with mate mapped to a different chr 0 + 0 with mate mapped to a different chr (mapQ>=5)