53362 + 0 in total (QC-passed reads + QC-failed reads) 52772 + 0 primary 0 + 0 secondary 590 + 0 supplementary 0 + 0 duplicates 0 + 0 primary duplicates 16789 + 0 mapped (31.46% : N/A) 16199 + 0 primary mapped (30.70% : N/A) 52772 + 0 paired in sequencing 26386 + 0 read1 26386 + 0 read2 15966 + 0 properly paired (30.25% : N/A) 16110 + 0 with itself and mate mapped 89 + 0 singletons (0.17% : N/A) 0 + 0 with mate mapped to a different chr 0 + 0 with mate mapped to a different chr (mapQ>=5)