40927 + 0 in total (QC-passed reads + QC-failed reads) 38614 + 0 primary 0 + 0 secondary 2313 + 0 supplementary 0 + 0 duplicates 0 + 0 primary duplicates 34814 + 0 mapped (85.06% : N/A) 32501 + 0 primary mapped (84.17% : N/A) 38614 + 0 paired in sequencing 19307 + 0 read1 19307 + 0 read2 31232 + 0 properly paired (80.88% : N/A) 32200 + 0 with itself and mate mapped 301 + 0 singletons (0.78% : N/A) 0 + 0 with mate mapped to a different chr 0 + 0 with mate mapped to a different chr (mapQ>=5)