44354 + 0 in total (QC-passed reads + QC-failed reads) 43590 + 0 primary 0 + 0 secondary 764 + 0 supplementary 0 + 0 duplicates 0 + 0 primary duplicates 13208 + 0 mapped (29.78% : N/A) 12444 + 0 primary mapped (28.55% : N/A) 43590 + 0 paired in sequencing 21795 + 0 read1 21795 + 0 read2 11332 + 0 properly paired (26.00% : N/A) 11870 + 0 with itself and mate mapped 574 + 0 singletons (1.32% : N/A) 0 + 0 with mate mapped to a different chr 0 + 0 with mate mapped to a different chr (mapQ>=5)